Magnesium in PDB 9bm2: State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp

The binding sites of Magnesium atom in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp (pdb code 9bm2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp, PDB code: 9bm2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:5.9 occ:1.00 OG1 A:THR1913 2.5 18.3 1.0 O A:HOH4802 2.6 11.1 1.0 O3B A:ADP4701 2.8 7.6 1.0 CB A:THR1913 3.2 7.1 1.0 O2A A:ADP4701 3.3 18.1 1.0 O1B A:ADP4701 3.3 7.6 1.0 NH2 A:ARG2358 3.5 6.3 1.0 PB A:ADP4701 3.6 2.5 1.0 O A:HOH4807 3.6 15.9 1.0 OD2 A:ASP1958 3.9 27.9 1.0 OD2 A:ASP2320 4.0 21.0 1.0 CG2 A:THR1913 4.1 10.6 1.0 O3A A:ADP4701 4.2 7.3 1.0 O A:HOH4803 4.2 10.5 1.0 CG A:ASP1958 4.3 22.5 1.0 PA A:ADP4701 4.3 9.5 1.0 N A:THR1913 4.3 4.4 1.0 O A:HOH4801 4.4 13.0 1.0 CA A:THR1913 4.4 4.9 1.0 OG1 A:THR2017 4.4 13.6 1.0 NH2 A:ARG2091 4.5 6.7 1.0 CB A:ASP1958 4.6 15.0 1.0 CZ A:ARG2358 4.8 6.1 1.0 OE2 A:GLU1959 4.8 25.0 1.0 OD1 A:ASP1958 4.9 21.6 1.0 O1A A:ADP4701 4.9 3.1 1.0 O2B A:ADP4701 5.0 5.5 1.0

Magnesium binding site 2 out of 2 in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-4 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:2.7 occ:1.00 OG A:SER2231 1.9 3.2 1.0 OE2 A:GLU2344 2.0 5.0 1.0 O2G A:ATP4702 2.1 5.5 1.0 O2B A:ATP4702 2.7 3.5 1.0 CD A:GLU2344 3.1 5.2 1.0 CB A:SER2231 3.2 2.4 1.0 PG A:ATP4702 3.3 3.2 1.0 O3B A:ATP4702 3.3 2.5 1.0 O1A A:ATP4702 3.4 7.5 1.0 OE1 A:GLU2344 3.5 10.2 1.0 PB A:ATP4702 3.6 2.1 1.0 OD2 A:ASP2304 3.9 13.3 1.0 NH2 A:ARG2684 3.9 8.2 1.0 NH2 A:ARG2726 4.1 3.5 1.0 CA A:SER2231 4.2 2.4 1.0 N A:SER2231 4.2 2.9 1.0 O3G A:ATP4702 4.2 3.8 1.0 O1G A:ATP4702 4.4 5.0 1.0 CG A:GLU2344 4.4 4.5 1.0 O3A A:ATP4702 4.4 2.0 1.0 NH1 A:ARG2729 4.4 5.2 1.0 PA A:ATP4702 4.5 3.0 1.0 OD1 A:ASP2304 4.5 11.0 1.0 OE2 A:GLU2688 4.6 26.3 1.0 CG A:ASP2304 4.6 10.8 1.0 CD A:GLU2688 4.9 22.4 1.0 O1B A:ATP4702 4.9 3.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.