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Magnesium in PDB 9bm4: State-5B of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp

Magnesium Binding Sites:

The binding sites of Magnesium atom in the State-5B of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp (pdb code 9bm4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-5B of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp, PDB code: 9bm4:

Magnesium binding site 1 out of 1 in 9bm4

Go back to Magnesium Binding Sites List in 9bm4
Magnesium binding site 1 out of 1 in the State-5B of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-5B of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg4705

b:48.4
occ:1.00
OG1 A:THR2602 2.0 61.6 1.0
O3G A:ATP4703 2.5 65.0 1.0
O2B A:ATP4703 2.7 65.0 1.0
CB A:THR2602 3.3 61.6 1.0
PB A:ATP4703 3.6 65.0 1.0
PG A:ATP4703 3.9 65.0 1.0
O1B A:ATP4703 3.9 65.0 1.0
CG2 A:THR2602 4.0 61.6 1.0
OE1 A:GLU2665 4.1 74.5 1.0
O3B A:ATP4703 4.1 65.0 1.0
CA A:THR2602 4.4 61.6 1.0
N A:THR2602 4.5 61.6 1.0
NZ A:LYS2601 4.5 62.0 1.0
NH2 A:ARG3088 4.6 75.1 1.0
O1G A:ATP4703 4.7 65.0 1.0
CB A:ASP2664 4.8 73.3 1.0
OD2 A:ASP2664 4.8 73.3 1.0
O A:ASP2664 4.9 73.3 1.0
O2G A:ATP4703 4.9 65.0 1.0

Reference:

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.
Page generated: Fri Aug 15 23:24:30 2025

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