Magnesium in PDB 9bmb: Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition

The binding sites of Magnesium atom in the Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition (pdb code 9bmb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition, PDB code: 9bmb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:90.0 occ:1.00 O1A A:ADP4701 2.0 79.9 1.0 PA A:ADP4701 3.5 79.9 1.0 O5' A:ADP4701 4.0 79.9 1.0 O3A A:ADP4701 4.2 79.9 1.0 CG2 A:THR1913 4.5 74.4 1.0 O2A A:ADP4701 4.6 79.9 1.0

Magnesium binding site 2 out of 2 in the Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Post-1 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:97.6 occ:1.00 O3B A:ATP4702 1.9 93.2 1.0 O2G A:ATP4702 2.0 93.2 1.0 O1B A:ATP4702 2.0 93.2 1.0 PB A:ATP4702 2.4 93.2 1.0 PG A:ATP4702 2.5 93.2 1.0 OG A:SER2231 3.1 93.8 1.0 O3G A:ATP4702 3.3 93.2 1.0 OE2 A:GLU2344 3.4 105.7 1.0 O3A A:ATP4702 3.5 93.2 1.0 O2B A:ATP4702 3.6 93.2 1.0 O1G A:ATP4702 3.7 93.2 1.0 NH2 A:ARG2726 3.9 103.9 1.0 NH2 A:ARG2729 4.0 100.9 1.0 O2A A:ATP4702 4.1 93.2 1.0 CB A:SER2231 4.2 93.8 1.0 NH1 A:ARG2726 4.3 103.9 1.0 PA A:ATP4702 4.4 93.2 1.0 CD A:GLU2344 4.4 105.7 1.0 CZ A:ARG2726 4.4 103.9 1.0 OE1 A:GLU2688 4.6 120.7 1.0 N A:SER2231 4.7 93.8 1.0 NZ A:LYS2230 4.8 92.1 1.0 CE A:LYS2230 4.8 92.1 1.0 NH1 A:ARG2729 4.8 100.9 1.0 CZ A:ARG2729 4.8 100.9 1.0 O1A A:ATP4702 4.9 93.2 1.0 OD1 A:ASP2304 4.9 117.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.