Magnesium in PDB 9bmc: Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition

The binding sites of Magnesium atom in the Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition (pdb code 9bmc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition, PDB code: 9bmc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:12.2 occ:1.00 O3B A:ADP4701 3.7 3.8 1.0 O3A A:ADP4701 3.8 3.8 1.0 OD2 A:ASP1958 3.9 5.5 1.0 OD1 A:ASP1958 4.0 5.5 1.0 CG A:ASP1958 4.4 5.5 1.0 PB A:ADP4701 4.4 3.8 1.0 O1A A:ADP4701 4.9 3.8 1.0

Magnesium binding site 2 out of 2 in the Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Post-2 Motor Domain From Full-Length Human Dynein-1 Bound to Microtubules in 5MM Adp Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:10.0 occ:1.00 O1B A:ATP4702 1.9 3.3 1.0 OG A:SER2231 2.0 2.8 1.0 OE2 A:GLU2344 2.6 4.2 1.0 OE2 A:GLU2688 2.9 8.6 1.0 O2G A:ATP4702 3.2 3.3 1.0 PB A:ATP4702 3.2 3.3 1.0 CB A:SER2231 3.3 2.8 1.0 O3B A:ATP4702 3.6 3.3 1.0 CD A:GLU2344 3.7 4.2 1.0 CD A:GLU2688 3.9 8.6 1.0 PG A:ATP4702 4.1 3.3 1.0 OD2 A:ASP2304 4.2 9.0 1.0 O3A A:ATP4702 4.2 3.3 1.0 O2A A:ATP4702 4.2 3.3 1.0 OE1 A:GLU2344 4.2 4.2 1.0 OE1 A:GLU2688 4.3 8.6 1.0 O2B A:ATP4702 4.3 3.3 1.0 NH1 A:ARG2684 4.4 9.8 1.0 CA A:SER2231 4.4 2.8 1.0 N A:SER2231 4.4 2.8 1.0 NH2 A:ARG2726 4.4 6.2 1.0 OD1 A:ASP2304 4.5 9.0 1.0 CG A:ASP2304 4.7 9.0 1.0 PA A:ATP4702 4.7 3.3 1.0 CG A:GLU2344 4.8 4.2 1.0 O3G A:ATP4702 4.8 3.3 1.0 O1A A:ATP4702 5.0 3.3 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.