Magnesium in PDB 9bu7: Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting.

All present enzymatic activity of Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting.:
3.6.4.12;

The binding sites of Magnesium atom in the Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting. (pdb code 9bu7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting., PDB code: 9bu7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:72.7 occ:1.00 OG1 E:THR341 1.8 69.2 1.0 S1G E:AGS501 2.2 72.0 1.0 OE2 E:GLU378 2.6 77.9 1.0 CB E:THR341 3.1 69.2 1.0 O1B E:AGS501 3.3 72.0 1.0 CG2 E:THR341 3.7 69.2 1.0 OE1 E:GLU379 3.8 78.2 1.0 CD E:GLU378 3.8 77.9 1.0 PG E:AGS501 4.1 72.0 1.0 CA E:THR341 4.2 69.2 1.0 CD E:GLU379 4.5 78.2 1.0 N E:THR341 4.5 69.2 1.0 PB E:AGS501 4.6 72.0 1.0 OE1 E:GLU378 4.6 77.9 1.0 O3B E:AGS501 4.7 72.0 1.0 O1A E:AGS501 4.7 72.0 1.0 CG E:GLU378 4.8 77.9 1.0 OE2 E:GLU379 4.8 78.2 1.0 O2G E:AGS501 4.9 72.0 1.0 O F:LYS391 4.9 46.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting. within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:46.3 occ:1.00 OG1 F:THR341 1.8 46.2 1.0 S1G F:AGS501 2.1 52.1 1.0 OE2 F:GLU378 2.6 45.2 1.0 CB F:THR341 3.0 46.2 1.0 O1B F:AGS501 3.5 52.1 1.0 OE2 F:GLU379 3.5 46.8 1.0 CG2 F:THR341 3.7 46.2 1.0 CD F:GLU378 3.8 45.2 1.0 PG F:AGS501 4.0 52.1 1.0 CA F:THR341 4.2 46.2 1.0 CG F:GLU379 4.4 46.8 1.0 CD F:GLU379 4.4 46.8 1.0 N F:THR341 4.5 46.2 1.0 NH2 G:ARG444 4.5 53.2 1.0 CG F:GLU378 4.6 45.2 1.0 O2G F:AGS501 4.6 52.1 1.0 OE1 F:GLU378 4.7 45.2 1.0 O3B F:AGS501 4.7 52.1 1.0 PB F:AGS501 4.7 52.1 1.0 O1A F:AGS501 4.7 52.1 1.0 OG1 F:THR419 4.9 38.9 1.0

R.Jaiswal, B.Braud, K.C.Hernandez-Ramirez, V.Santosh, A.Washington, C.R.Escalante. Cryo-Em Structure of AAV2 REP68 Bound to Integration Site AAVS1: Insights Into the Mechanism of Dna Melting. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 39883011
DOI: 10.1093/NAR/GKAF033