Magnesium in PDB 9bui: M1A Midnolin-Proteasome (with Ubl)

All present enzymatic activity of M1A Midnolin-Proteasome (with Ubl):
3.4.25.1;

The binding sites of Magnesium atom in the M1A Midnolin-Proteasome (with Ubl) (pdb code 9bui). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the M1A Midnolin-Proteasome (with Ubl), PDB code: 9bui:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the M1A Midnolin-Proteasome (with Ubl)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of M1A Midnolin-Proteasome (with Ubl) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:238.9 occ:1.00 O1A A:ATP501 1.9 243.6 1.0 O1B A:ATP501 2.0 243.6 1.0 OG1 A:THR223 2.1 236.9 1.0 O2G A:ATP501 2.2 243.6 1.0 PB A:ATP501 2.3 243.6 1.0 O3A A:ATP501 2.3 243.6 1.0 O3B A:ATP501 2.5 243.6 1.0 PA A:ATP501 2.5 243.6 1.0 PG A:ATP501 2.7 243.6 1.0 O1G A:ATP501 3.1 243.6 1.0 CB A:THR223 3.1 236.9 1.0 O2A A:ATP501 3.4 243.6 1.0 N A:THR223 3.8 236.9 1.0 O2B A:ATP501 3.8 243.6 1.0 O5' A:ATP501 3.8 243.6 1.0 CA A:THR223 4.0 236.9 1.0 O3G A:ATP501 4.1 243.6 1.0 CG2 A:THR223 4.2 236.9 1.0 CA A:GLY219 4.9 239.7 1.0 NH1 B:ARG346 4.9 256.1 1.0 C A:LYS222 4.9 238.2 1.0

Magnesium binding site 2 out of 2 in the M1A Midnolin-Proteasome (with Ubl)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of M1A Midnolin-Proteasome (with Ubl) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:293.8 occ:1.00 O1A B:ADP501 1.9 298.5 1.0 O1B B:ADP501 2.0 298.5 1.0 CG2 B:THR233 2.2 284.8 1.0 O2A B:ADP501 2.2 298.5 1.0 PA B:ADP501 2.3 298.5 1.0 N B:THR233 2.4 284.8 1.0 CB B:THR233 2.5 284.8 1.0 CA B:THR233 2.9 284.8 1.0 PB B:ADP501 3.0 298.5 1.0 O3A B:ADP501 3.0 298.5 1.0 C B:LYS232 3.6 281.4 1.0 O3B B:ADP501 3.6 298.5 1.0 N B:LYS232 3.7 281.4 1.0 O5' B:ADP501 3.8 298.5 1.0 OG1 B:THR233 3.8 284.8 1.0 C B:THR233 3.9 284.8 1.0 N B:LEU234 3.9 288.7 1.0 CA B:LYS232 4.0 281.4 1.0 CB B:LYS232 4.0 281.4 1.0 O2B B:ADP501 4.3 298.5 1.0 C5' B:ADP501 4.3 298.5 1.0 C B:GLY231 4.4 289.7 1.0 O B:LYS232 4.6 281.4 1.0 CA B:GLY231 4.8 289.7 1.0 N B:GLY231 4.9 289.7 1.0

C.Nardone, X.Gu, J.Gao, M.C.J.Yip, H.Seo, K.Song, L.Sebastian, S.Dhe-Paganon, M.Negasi, N.Kamitaki, M.E.Greenberg, S.J.Elledge, S.Shao. Structural Basis For Nuclear Protein Degradation By the Midnolin-Proteasome Pathway To Be Published.