Magnesium in PDB 9bxu: Cryo-Em Structure of Atp Synthase Dp State

All present enzymatic activity of Cryo-Em Structure of Atp Synthase Dp State:
7.1.2.2;

The binding sites of Magnesium atom in the Cryo-Em Structure of Atp Synthase Dp State (pdb code 9bxu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Atp Synthase Dp State, PDB code: 9bxu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Atp Synthase Dp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Atp Synthase Dp State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:8.9 occ:1.00 O1B D:ADP601 2.1 16.3 1.0 OG1 D:THR255 2.5 11.5 1.0 PB D:ADP601 3.4 16.3 1.0 CB D:THR255 3.8 11.5 1.0 O2B D:ADP601 4.0 16.3 1.0 O1A D:ADP601 4.1 16.3 1.0 OE2 D:GLU280 4.2 13.8 1.0 NH1 D:ARG281 4.4 12.5 1.0 O3B D:ADP601 4.4 16.3 1.0 O3A D:ADP601 4.4 16.3 1.0 OE2 D:GLU284 4.5 14.8 1.0 N D:THR255 4.6 11.5 1.0 PA D:ADP601 4.6 16.3 1.0 CG2 D:THR255 4.6 11.5 1.0 OE1 D:GLU284 4.7 14.8 1.0 CA D:THR255 4.7 11.5 1.0 O2A D:ADP601 4.8 16.3 1.0 CD D:GLU280 4.9 13.8 1.0 OD1 D:ASN349 5.0 15.1 1.0 CG D:GLU280 5.0 13.8 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Atp Synthase Dp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Atp Synthase Dp State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:9.8 occ:1.00 O2B F:ADP601 2.5 14.5 1.0 O1B F:ADP601 3.1 14.5 1.0 PB F:ADP601 3.3 14.5 1.0 CG2 F:THR255 3.4 12.9 1.0 CB F:THR255 3.8 12.9 1.0 O2A F:ADP601 4.0 14.5 1.0 OE1 F:GLU280 4.2 17.8 1.0 O3B F:ADP601 4.4 14.5 1.0 O3A F:ADP601 4.4 14.5 1.0 OE2 F:GLU280 4.5 17.8 1.0 N F:THR255 4.6 12.9 1.0 PA F:ADP601 4.7 14.5 1.0 NH1 F:ARG281 4.7 12.4 1.0 OG1 F:THR255 4.7 12.9 1.0 CD F:GLU280 4.7 17.8 1.0 OE2 F:GLU284 4.8 15.9 1.0 CA F:THR255 4.8 12.9 1.0 CE F:LYS254 5.0 13.3 1.0 OE1 F:GLU284 5.0 15.9 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Atp Synthase Dp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Atp Synthase Dp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:10.2 occ:1.00 OG1 A:THR219 2.0 10.4 1.0 O2G A:ATP601 2.2 10.5 0.8 O2B A:ATP601 2.3 10.5 1.0 CB A:THR219 3.3 10.4 1.0 PG A:ATP601 3.5 10.5 0.8 PB A:ATP601 3.6 10.5 1.0 O3B A:ATP601 3.7 10.5 1.0 CG2 A:THR219 4.1 10.4 1.0 CA A:THR219 4.3 10.4 1.0 O1G A:ATP601 4.3 10.5 0.8 N A:THR219 4.4 10.4 1.0 O1A A:ATP601 4.5 10.5 1.0 O3A A:ATP601 4.5 10.5 1.0 O3G A:ATP601 4.6 10.5 0.8 O1B A:ATP601 4.6 10.5 1.0 OD1 A:ASP312 4.8 9.7 1.0 O2A A:ATP601 4.9 10.5 1.0 PA A:ATP601 4.9 10.5 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Atp Synthase Dp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Atp Synthase Dp State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:8.6 occ:1.00 O2B C:ATP601 2.1 12.9 1.0 OG1 C:THR219 2.2 9.7 1.0 O3G C:ATP601 2.4 12.9 0.8 CB C:THR219 3.5 9.7 1.0 PB C:ATP601 3.5 12.9 1.0 PG C:ATP601 3.7 12.9 0.8 O3B C:ATP601 3.7 12.9 1.0 CG2 C:THR219 4.3 9.7 1.0 N C:THR219 4.3 9.7 1.0 O1B C:ATP601 4.4 12.9 1.0 CA C:THR219 4.4 9.7 1.0 O3A C:ATP601 4.5 12.9 1.0 O1G C:ATP601 4.5 12.9 0.8 O1A C:ATP601 4.6 12.9 1.0 O2G C:ATP601 4.7 12.9 0.8 OD1 C:ASP312 4.7 15.5 1.0 OD2 C:ASP312 4.9 15.5 1.0 PA C:ATP601 4.9 12.9 1.0 O2A C:ATP601 5.0 12.9 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Atp Synthase Dp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Atp Synthase Dp State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:10.2 occ:1.00 O2G B:ATP601 2.2 10.5 0.8 O2B B:ATP601 2.3 10.5 1.0 OG1 B:THR219 2.9 10.4 1.0 PG B:ATP601 3.2 10.5 0.8 PB B:ATP601 3.3 10.5 1.0 O3B B:ATP601 3.3 10.5 1.0 O3G B:ATP601 3.4 10.5 0.8 CE B:LYS218 3.9 9.2 1.0 O1B B:ATP601 4.2 10.5 1.0 N B:THR219 4.2 10.4 1.0 CB B:THR219 4.2 10.4 1.0 CB B:LYS218 4.2 9.2 1.0 NZ B:LYS218 4.4 9.2 1.0 O1G B:ATP601 4.5 10.5 0.8 O3A B:ATP601 4.6 10.5 1.0 CA B:THR219 4.8 10.4 1.0 CD B:LYS218 4.8 9.2 1.0 O1A B:ATP601 4.8 10.5 1.0 OD1 B:ASP312 4.9 9.7 1.0 N B:LYS218 4.9 9.2 1.0 CA B:LYS218 4.9 9.2 1.0 C B:LYS218 5.0 9.2 1.0

Z.Zhang, R.Maharjan, M.Tringides. Cryo-Em Structure of Atp Synthase Dp State To Be Published.