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Magnesium in PDB 9c2k: The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab

Protein crystallography data

The structure of The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab, PDB code: 9c2k was solved by M.Ojha, D.Koirala, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.33 / 2.42
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 72.359, 76.238, 82.599, 116.56, 94.91, 102.75
R / Rfree (%) 20.6 / 26.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab (pdb code 9c2k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab, PDB code: 9c2k:

Magnesium binding site 1 out of 1 in 9c2k

Go back to Magnesium Binding Sites List in 9c2k
Magnesium binding site 1 out of 1 in the The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Hiv-1 Rev Response Element Stem-Loop II in Complex with A Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg102

b:67.4
occ:1.00
OP1 R:U69 3.4 91.6 1.0
OP2 R:G70 4.0 83.3 1.0
O5' R:U69 4.2 86.9 1.0
C5' R:U69 4.3 85.1 1.0
P R:U69 4.4 88.8 1.0
OP1 R:G70 4.5 83.6 1.0
P R:G70 4.6 83.2 1.0
O R:HOH209 4.7 75.7 1.0
O3' R:U69 4.9 85.1 1.0

Reference:

M.Ojha, D.Koirala. Crystal Structure of Hiv-1 Rre SL2 in Complex with Fab BL3-6 To Be Published.
Page generated: Fri Aug 15 23:37:07 2025

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