Atomistry » Magnesium » PDB 9bz9-9c87 » 9c48
Atomistry »
  Magnesium »
    PDB 9bz9-9c87 »
      9c48 »

Magnesium in PDB 9c48: Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State (pdb code 9c48). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State, PDB code: 9c48:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 9c48

Go back to Magnesium Binding Sites List in 9c48
Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg405

b:48.7
occ:1.00
OD2 A:ASP170 2.4 55.4 1.0
O2G C:ATP502 2.5 45.3 1.0
CG A:ASP170 3.1 55.4 1.0
OD1 A:ASP170 3.1 55.4 1.0
O A:HOH585 3.5 48.7 1.0
PG C:ATP502 3.7 45.3 1.0
O1G C:ATP502 3.7 45.3 1.0
O1B C:ATP502 3.8 45.3 1.0
NZ A:LYS313 3.8 41.3 1.0
O C:HOH643 3.9 58.6 1.0
NH2 A:ARG295 4.2 41.2 1.0
O C:HOH631 4.4 53.3 1.0
CB A:ASP170 4.5 55.4 1.0
O3B C:ATP502 4.6 45.3 1.0
PB C:ATP502 4.7 45.3 1.0
O3G C:ATP502 4.8 45.3 1.0
O A:ASP170 4.9 55.4 1.0

Magnesium binding site 2 out of 3 in 9c48

Go back to Magnesium Binding Sites List in 9c48
Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:48.7
occ:1.00
OD2 B:ASP170 2.4 55.4 1.0
O2G A:ATP401 2.5 45.3 1.0
CG B:ASP170 3.1 55.4 1.0
OD1 B:ASP170 3.1 55.4 1.0
O B:HOH682 3.5 55.8 1.0
PG A:ATP401 3.7 45.3 1.0
O1G A:ATP401 3.7 45.3 1.0
O1B A:ATP401 3.8 45.3 1.0
NZ B:LYS313 3.9 41.3 1.0
O A:HOH543 3.9 58.2 1.0
NH2 B:ARG295 4.2 41.2 1.0
O A:HOH529 4.4 51.6 1.0
CB B:ASP170 4.5 55.4 1.0
O3B A:ATP401 4.6 45.3 1.0
PB A:ATP401 4.7 45.3 1.0
O3G A:ATP401 4.8 45.3 1.0
O B:ASP170 4.9 55.4 1.0

Magnesium binding site 3 out of 3 in 9c48

Go back to Magnesium Binding Sites List in 9c48
Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Full-Length Human P2X4 Receptor in the Atp- Bound Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg501

b:48.7
occ:1.00
OD2 C:ASP170 2.4 55.4 1.0
O2G B:ATP502 2.5 45.3 1.0
CG C:ASP170 3.1 55.4 1.0
OD1 C:ASP170 3.1 55.4 1.0
O C:HOH682 3.4 52.5 1.0
PG B:ATP502 3.7 45.3 1.0
O1G B:ATP502 3.7 45.3 1.0
O1B B:ATP502 3.8 45.3 1.0
NZ C:LYS313 3.8 41.3 1.0
O B:HOH643 3.9 57.1 1.0
NH2 C:ARG295 4.2 41.2 1.0
O B:HOH632 4.4 51.6 1.0
CB C:ASP170 4.5 55.4 1.0
O3B B:ATP502 4.6 45.3 1.0
PB B:ATP502 4.7 45.3 1.0
O3G B:ATP502 4.8 45.3 1.0
O C:ASP170 4.9 55.4 1.0

Reference:

H.Shi, I.A.Ditter, A.C.Oken, S.E.Mansoor. Human P2X4 Receptor Gating Is Modulated By A Stable Cytoplasmic Cap and A Unique Allosteric Pocket. Sci Adv V. 11 R3315 2025.
ISSN: ESSN 2375-2548
PubMed: 39823330
DOI: 10.1126/SCIADV.ADR3315
Page generated: Fri Aug 15 23:37:09 2025

Last articles

Mn in 2QF2
Mn in 2QGI
Mn in 2QEY
Mn in 2QF1
Mn in 2QCS
Mn in 2PYO
Mn in 2QEW
Mn in 2QB0
Mn in 2QB5
Mn in 2QB6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy