Magnesium in PDB 9cc1: Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp

All present enzymatic activity of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp:
3.4.21.53;

The binding sites of Magnesium atom in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp (pdb code 9cc1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp, PDB code: 9cc1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:30.3 occ:1.00 OG1 A:THR530 2.1 37.6 1.0 O1B A:ADP1002 2.5 38.3 1.0 O2B A:ADP1002 2.6 38.3 1.0 PB A:ADP1002 3.1 38.3 1.0 CB A:THR530 3.2 37.6 1.0 O2A A:ADP1002 3.7 38.3 1.0 NH2 B:ARG652 4.1 40.2 1.0 N A:THR530 4.1 37.6 1.0 O3A A:ADP1002 4.1 38.3 1.0 CG2 A:THR530 4.2 37.6 1.0 PA A:ADP1002 4.2 38.3 1.0 O3B A:ADP1002 4.2 38.3 1.0 CA A:THR530 4.3 37.6 1.0 CG2 A:THR638 4.3 46.0 1.0 OD1 A:ASP590 4.4 46.2 1.0 O1A A:ADP1002 4.4 38.3 1.0 OE2 A:GLU591 4.5 51.3 1.0 NH2 A:ARG710 4.5 33.6 1.0 OD2 A:ASP590 4.6 46.2 1.0 CG A:ASP590 5.0 46.2 1.0

Magnesium binding site 2 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:32.9 occ:1.00 O1B B:ADP1002 2.0 38.6 1.0 OG1 B:THR530 2.3 27.5 1.0 PB B:ADP1002 3.0 38.6 1.0 O2B B:ADP1002 3.2 38.6 1.0 CB B:THR530 3.5 27.5 1.0 NH2 C:ARG652 3.7 33.1 1.0 O2A B:ADP1002 3.8 38.6 1.0 O3B B:ADP1002 4.0 38.6 1.0 O3A B:ADP1002 4.2 38.6 1.0 OE2 B:GLU591 4.2 35.1 1.0 OD1 B:ASP590 4.3 31.8 1.0 N B:THR530 4.3 27.5 1.0 CG2 B:THR530 4.4 27.5 1.0 PA B:ADP1002 4.4 38.6 1.0 OD2 B:ASP590 4.5 31.8 1.0 NH2 B:ARG710 4.5 28.4 1.0 CA B:THR530 4.5 27.5 1.0 OD2 C:ASP612 4.8 33.3 1.0 CZ C:ARG652 4.8 33.1 1.0 O1A B:ADP1002 4.8 38.6 1.0 CG B:ASP590 4.8 31.8 1.0 NZ B:LYS529 4.9 26.1 1.0 CE B:LYS529 5.0 26.1 1.0

Magnesium binding site 3 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:26.1 occ:1.00 OG1 C:THR530 2.0 28.4 1.0 O1B C:ADP1002 2.4 27.7 1.0 O3B C:ADP1002 2.8 27.7 1.0 PB C:ADP1002 3.1 27.7 1.0 CB C:THR530 3.3 28.4 1.0 O2A C:ADP1002 3.4 27.7 1.0 OE2 C:GLU591 3.6 38.1 1.0 OD1 C:ASP590 3.8 33.6 1.0 N C:THR530 4.1 28.4 1.0 CG2 C:THR530 4.2 28.4 1.0 O3A C:ADP1002 4.2 27.7 1.0 O2B C:ADP1002 4.2 27.7 1.0 CA C:THR530 4.3 28.4 1.0 PA C:ADP1002 4.4 27.7 1.0 CG C:ASP590 4.7 33.6 1.0 CD C:GLU591 4.7 38.1 1.0 OD2 C:ASP590 4.8 33.6 1.0 NH2 D:ARG652 4.8 42.3 1.0 OG1 C:THR638 4.9 31.9 1.0 NZ C:LYS529 4.9 27.3 1.0 CE C:LYS529 5.0 27.3 1.0

Magnesium binding site 4 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:52.5 occ:1.00 O2B D:ADP1002 2.1 44.2 1.0 OG1 D:THR530 2.1 43.0 1.0 CB D:THR530 3.3 43.0 1.0 PB D:ADP1002 3.5 44.2 1.0 O2A D:ADP1002 3.5 44.2 1.0 O3A D:ADP1002 3.9 44.2 1.0 PA D:ADP1002 4.0 44.2 1.0 N D:THR530 4.0 43.0 1.0 O3B D:ADP1002 4.1 44.2 1.0 NH2 E:ARG652 4.2 80.5 1.0 CG2 D:THR530 4.3 43.0 1.0 CA D:THR530 4.3 43.0 1.0 O1A D:ADP1002 4.4 44.2 1.0 OD2 D:ASP590 4.4 53.0 1.0 O1B D:ADP1002 4.6 44.2 1.0 CG2 D:THR638 4.7 44.7 1.0 OD1 D:ASP590 4.7 53.0 1.0 CG D:ASP590 4.8 53.0 1.0 C D:LYS529 5.0 40.6 1.0

Magnesium binding site 5 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:54.7 occ:1.00 O1B E:ADP1000 2.1 50.2 1.0 O2B E:ADP1000 2.2 50.2 1.0 OG1 E:THR530 2.2 52.6 1.0 PB E:ADP1000 2.5 50.2 1.0 O2A E:ADP1000 3.3 50.2 1.0 CB E:THR530 3.3 52.6 1.0 O3A E:ADP1000 3.6 50.2 1.0 PA E:ADP1000 3.7 50.2 1.0 O3B E:ADP1000 3.8 50.2 1.0 O1A E:ADP1000 3.8 50.2 1.0 NH2 E:ARG710 3.9 48.2 1.0 N E:THR530 4.0 52.6 1.0 CA E:THR530 4.2 52.6 1.0 CG2 E:THR530 4.3 52.6 1.0 OD2 E:ASP590 4.9 74.1 1.0

Magnesium binding site 6 out of 6 in the Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Human Mitochondrial LONP1 Idle State Bound to Substrate and 6 Adp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1001 b:70.6 occ:1.00 O3B F:ADP1000 2.1 70.7 1.0 O2B F:ADP1000 2.5 70.7 1.0 PB F:ADP1000 2.7 70.7 1.0 O3A F:ADP1000 3.7 70.7 1.0 OG1 F:THR530 3.9 77.6 1.0 O1B F:ADP1000 4.0 70.7 1.0 O2A F:ADP1000 4.0 70.7 1.0 PA F:ADP1000 4.4 70.7 1.0 N F:GLY526 4.8 70.7 1.0 NZ F:LYS529 4.9 77.5 1.0 CB F:THR530 4.9 77.6 1.0 O1A F:ADP1000 5.0 70.7 1.0

J.T.Mindrebo, G.C.Lander. Structural and Mechanistic Studies on Human LONP1 Redefine the Hand-Over-Hand Translocation Mechanism To Be Published.