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Magnesium in PDB 9cev: Spizellomyces Punctatus Fanzor (Spufz) State 2

Other elements in 9cev:

The structure of Spizellomyces Punctatus Fanzor (Spufz) State 2 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Spizellomyces Punctatus Fanzor (Spufz) State 2 (pdb code 9cev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Spizellomyces Punctatus Fanzor (Spufz) State 2, PDB code: 9cev:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 9cev

Go back to Magnesium Binding Sites List in 9cev
Magnesium binding site 1 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Spizellomyces Punctatus Fanzor (Spufz) State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg701

b:30.0
occ:1.00
OD1 P:ASN384 2.0 81.1 1.0
OD2 P:ASP382 2.3 89.2 1.0
OD1 P:ASP605 2.4 89.3 1.0
H1 P:HOH802 2.8 30.0 1.0
HD22 P:ASN384 2.8 81.1 1.0
O P:HOH802 2.9 30.0 1.0
CG P:ASN384 2.9 81.1 1.0
ND2 P:ASN384 3.2 81.1 1.0
CG P:ASP382 3.2 89.2 1.0
HG2 P:ARG604 3.4 90.1 1.0
OD1 P:ASP382 3.4 89.2 1.0
MG P:MG702 3.6 30.0 1.0
HA P:ASP605 3.6 89.3 1.0
H2 P:HOH802 3.6 30.0 1.0
CG P:ASP605 3.6 89.3 1.0
HD3 P:ARG604 3.8 90.1 1.0
O P:PRO383 4.0 86.4 1.0
HD21 P:ASN384 4.1 81.1 1.0
H1 P:HOH801 4.2 30.0 1.0
O P:HOH801 4.3 30.0 1.0
CG P:ARG604 4.3 90.1 1.0
CB P:ASN384 4.3 81.1 1.0
HG P:SER544 4.3 86.6 1.0
CA P:ASP605 4.4 89.3 1.0
CD P:ARG604 4.4 90.1 1.0
HB3 P:ASN384 4.5 81.1 1.0
OD2 P:ASP605 4.5 89.3 1.0
CB P:ASP605 4.5 89.3 1.0
HG P:SER608 4.5 91.8 1.0
HD2 P:ARG604 4.6 90.1 1.0
CB P:ASP382 4.6 89.2 1.0
HB3 P:SER608 4.6 91.8 1.0
HB3 P:ASP605 4.6 89.3 1.0
N P:ASP605 4.7 89.3 1.0
HH12 P:ARG604 4.7 90.1 1.0
O P:ASP382 4.7 89.2 1.0
HB3 P:ASP382 4.7 89.2 1.0
HB2 P:SER608 4.7 91.8 1.0
HG3 P:ARG604 4.7 90.1 1.0
HA P:ASN384 4.8 81.1 1.0
C P:PRO383 4.9 86.4 1.0
OG P:SER544 4.9 86.6 1.0
HB2 P:ASN384 4.9 81.1 1.0
H P:ASP605 5.0 89.3 1.0

Magnesium binding site 2 out of 2 in 9cev

Go back to Magnesium Binding Sites List in 9cev
Magnesium binding site 2 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Spizellomyces Punctatus Fanzor (Spufz) State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg702

b:30.0
occ:1.00
OE2 P:GLU540 1.9 85.1 1.0
O P:HOH802 2.0 30.0 1.0
OD1 P:ASP382 2.0 89.2 1.0
O P:HOH801 2.0 30.0 1.0
H1 P:HOH802 2.2 30.0 1.0
H2 P:HOH802 2.4 30.0 1.0
CD P:GLU540 2.4 85.1 1.0
H1 P:HOH801 2.6 30.0 1.0
H2 P:HOH801 2.6 30.0 1.0
OE1 P:GLU540 2.9 85.1 1.0
CG P:ASP382 3.0 89.2 1.0
HG P:SER608 3.2 91.8 1.0
HG2 P:GLU540 3.5 85.1 1.0
CG P:GLU540 3.5 85.1 1.0
OD2 P:ASP382 3.5 89.2 1.0
MG P:MG701 3.6 30.0 1.0
HG3 P:GLU540 3.8 85.1 1.0
O P:PRO383 4.0 86.4 1.0
OG P:SER608 4.0 91.8 1.0
HD2 P:PRO383 4.2 86.4 1.0
HE1 P:MET612 4.2 94.5 1.0
HA P:ASP382 4.2 89.2 1.0
HG P:SER544 4.3 86.6 1.0
CB P:ASP382 4.3 89.2 1.0
HE2 P:MET612 4.3 94.5 1.0
HB2 P:ASP382 4.5 89.2 1.0
HB3 P:TRP506 4.5 65.4 1.0
OG P:SER544 4.6 86.6 1.0
CE P:MET612 4.6 94.5 1.0
CA P:ASP382 4.7 89.2 1.0
OG1 P:THR543 4.7 87.5 1.0
OD1 P:ASN384 4.7 81.1 1.0
HE3 P:MET612 4.8 94.5 1.0
HG2 P:PRO383 4.8 86.4 1.0
C P:ASP382 4.8 89.2 1.0
CB P:GLU540 4.8 85.1 1.0
HB2 P:SER608 4.8 91.8 1.0
HB3 P:SER608 4.9 91.8 1.0
CB P:SER608 4.9 91.8 1.0
N P:PRO383 4.9 86.4 1.0
CD P:PRO383 4.9 86.4 1.0
HD22 P:ASN384 4.9 81.1 1.0
HG1 P:THR543 4.9 87.5 1.0
HB3 P:GLU540 5.0 85.1 1.0

Reference:

P.Xu, M.Saito, G.Faure, S.Maguire, S.Chau-Duy-Tam Vo, M.E.Wilkinson, H.Kuang, B.Wang, W.J.Rice, R.K.Macrae, F.Zhang. Structural Insights Into the Diversity and Dna Cleavage Mechanism of Fanzor. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39208796
DOI: 10.1016/J.CELL.2024.07.050
Page generated: Sat Aug 16 00:08:47 2025

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