Magnesium in PDB 9cey: Spizellomyces Punctatus Fanzor (Spufz) State 5

The structure of Spizellomyces Punctatus Fanzor (Spufz) State 5 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Spizellomyces Punctatus Fanzor (Spufz) State 5 (pdb code 9cey). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Spizellomyces Punctatus Fanzor (Spufz) State 5, PDB code: 9cey:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Spizellomyces Punctatus Fanzor (Spufz) State 5 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg701 b:37.8 occ:1.00 OD2 P:ASP383 1.9 41.9 1.0 OD1 P:ASP606 1.9 42.8 1.0 O P:HOH802 1.9 46.6 1.0 OD1 P:ASN385 2.0 45.8 1.0 HD22 P:ASN385 2.1 47.2 1.0 H1 P:HOH802 2.4 46.6 1.0 H2 P:HOH802 2.4 46.6 1.0 ND2 P:ASN385 2.5 47.2 1.0 CG P:ASN385 2.5 46.2 1.0 HA P:ASP606 2.6 42.5 1.0 CG P:ASP383 3.0 39.6 1.0 CG P:ASP606 3.1 46.0 1.0 HG2 P:ARG605 3.2 43.4 1.0 HD21 P:ASN385 3.4 47.2 1.0 CA P:ASP606 3.5 42.5 1.0 OD1 P:ASP383 3.5 39.3 1.0 H1 P:HOH801 3.7 37.0 1.0 CB P:ASP606 3.8 46.4 1.0 HB3 P:SER609 3.8 37.5 1.0 O P:HOH801 3.9 37.0 1.0 HB3 P:ASP606 3.9 46.4 1.0 N P:ASP606 4.0 45.5 1.0 CB P:ASN385 4.0 42.6 1.0 HB2 P:SER609 4.0 37.5 1.0 OD2 P:ASP606 4.0 47.0 1.0 OP1 T:DT-19 4.1 39.0 1.0 HB3 P:ASP383 4.2 39.1 1.0 MG P:MG702 4.2 37.0 1.0 O P:ARG605 4.2 48.0 1.0 HG P:SER609 4.2 43.4 1.0 HB3 P:ASN385 4.2 42.6 1.0 CB P:ASP383 4.2 39.1 1.0 CG P:ARG605 4.2 43.4 1.0 HD3 P:ARG605 4.3 42.5 1.0 O P:PRO384 4.3 46.5 1.0 C P:ARG605 4.3 40.2 1.0 CB P:SER609 4.3 37.5 1.0 O P:ASP383 4.4 37.3 1.0 HB2 P:ASN385 4.4 42.6 1.0 H P:ASP606 4.5 45.5 1.0 HG3 P:ARG605 4.6 43.4 1.0 H2 P:HOH801 4.6 37.0 1.0 C P:ASP606 4.7 36.1 1.0 OG P:SER609 4.7 43.4 1.0 OP2 T:DT-19 4.7 47.1 1.0 CD P:ARG605 4.7 42.5 1.0 O P:ASP606 4.8 41.4 1.0 HB2 P:ASP606 4.8 46.4 1.0 C P:ASP383 4.9 27.8 1.0 C P:PRO384 4.9 34.0 1.0 HB2 P:ASP388 4.9 38.6 1.0 HD2 P:ARG605 4.9 42.5 1.0 HB2 P:ASP383 4.9 39.1 1.0 P T:DT-19 4.9 35.9 1.0 CA P:ASN385 5.0 37.8 1.0

Magnesium binding site 2 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Spizellomyces Punctatus Fanzor (Spufz) State 5 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg702 b:37.0 occ:1.00 OD1 P:ASP383 1.8 39.3 1.0 OP1 T:DT-19 1.9 39.0 1.0 OE2 P:GLU541 1.9 50.9 1.0 OE1 P:GLU541 2.0 58.3 1.0 H2 P:HOH801 2.2 37.0 1.0 H1 P:HOH801 2.2 37.0 1.0 CD P:GLU541 2.3 55.5 1.0 O P:HOH801 2.5 37.0 1.0 CG P:ASP383 3.0 39.6 1.0 O P:PRO384 3.1 46.5 1.0 HG P:SER609 3.2 43.4 1.0 P T:DT-19 3.2 35.9 1.0 HD2 P:PRO384 3.3 40.0 1.0 H2 P:HOH802 3.3 46.6 1.0 H1 P:HOH802 3.5 46.6 1.0 OD2 P:ASP383 3.5 41.9 1.0 O3' T:DT-20 3.7 20.0 1.0 HE1 P:MET613 3.7 40.4 1.0 O P:HOH802 3.8 46.6 1.0 CG P:GLU541 3.8 52.6 1.0 HG2 P:PRO384 3.9 35.2 1.0 HA P:ASP383 3.9 33.1 1.0 OG P:SER609 4.0 43.4 1.0 HD22 P:ASN385 4.0 47.2 1.0 HB3 P:GLU541 4.0 49.1 1.0 H5'' T:DT-19 4.1 49.8 1.0 CD P:PRO384 4.1 40.0 1.0 OP2 T:DT-19 4.1 47.1 1.0 OD1 P:ASN385 4.1 45.8 1.0 N P:PRO384 4.1 23.8 1.0 CB P:ASP383 4.1 39.1 1.0 C P:PRO384 4.2 34.0 1.0 HB3 P:TRP507 4.2 41.1 1.0 MG P:MG701 4.2 37.8 1.0 C P:ASP383 4.3 27.8 1.0 HE2 P:MET613 4.3 40.4 1.0 H5' T:DT-19 4.3 49.8 1.0 CA P:ASP383 4.3 33.1 1.0 O5' T:DT-19 4.3 51.9 1.0 HG3 P:GLU541 4.3 52.6 1.0 HG2 P:GLU541 4.4 52.6 1.0 C5' T:DT-19 4.5 49.8 1.0 HB2 P:ASP383 4.5 39.1 1.0 CE P:MET613 4.5 40.4 1.0 CB P:GLU541 4.5 49.1 1.0 CG P:PRO384 4.6 35.2 1.0 HA3 P:GLY505 4.6 43.5 1.0 CG P:ASN385 4.7 46.2 1.0 ND2 P:ASN385 4.7 47.2 1.0 CA P:PRO384 4.7 26.4 1.0 HB2 P:SER609 4.8 37.5 1.0 CB P:SER609 4.8 37.5 1.0 O P:ASP383 4.9 37.3 1.0 HB2 P:TRP507 4.9 41.1 1.0 HB3 P:SER609 5.0 37.5 1.0 HE3 P:TRP507 5.0 44.1 1.0

P.Xu, M.Saito, G.Faure, S.Maguire, S.Chau-Duy-Tam Vo, M.E.Wilkinson, H.Kuang, B.Wang, W.J.Rice, R.K.Macrae, F.Zhang. Structural Insights Into the Diversity and Dna Cleavage Mechanism of Fanzor. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39208796
DOI: 10.1016/J.CELL.2024.07.050