Magnesium in PDB 9cgc: Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)

All present enzymatic activity of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State):
3.4.19.12; 3.4.25.1;

The structure of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) (pdb code 9cgc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State), PDB code: 9cgc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg501 b:124.8 occ:1.00 O3B J:ATP501 1.9 127.4 1.0 OG1 I:THR230 2.0 115.0 1.0 O1G J:ATP501 2.0 126.0 1.0 O1B J:ATP501 2.3 123.5 1.0 PG J:ATP501 2.4 132.7 1.0 PB J:ATP501 2.5 122.7 1.0 CB I:THR230 3.3 112.6 1.0 O3G J:ATP501 3.4 134.9 1.0 O2B J:ATP501 3.5 118.9 1.0 O2G J:ATP501 3.6 116.0 1.0 NZ I:LYS229 3.8 110.2 1.0 O3A J:ATP501 3.8 116.1 1.0 NH2 J:ARG309 3.8 152.5 1.0 N I:THR230 3.9 113.0 1.0 CA I:THR230 4.1 109.9 1.0 O1A J:ATP501 4.2 115.5 1.0 CG2 I:THR230 4.3 108.8 1.0 PA J:ATP501 4.5 121.0 1.0 OD2 I:ASP282 4.6 146.5 1.0 CB I:LYS229 4.6 97.7 1.0 CE I:LYS229 4.7 101.2 1.0 C I:LYS229 4.7 108.4 1.0 OD1 I:ASP282 5.0 131.4 1.0

Magnesium binding site 2 out of 5 in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg502 b:121.7 occ:1.00 O2G K:ATP501 2.0 121.1 1.0 O3B K:ATP501 2.0 118.5 1.0 O2B K:ATP501 2.1 118.8 1.0 PB K:ATP501 2.3 121.6 1.0 OG1 K:THR220 2.5 97.9 1.0 PG K:ATP501 2.5 127.7 1.0 O3A K:ATP501 2.6 118.4 1.0 CB K:THR220 3.2 101.2 1.0 OD2 L:ASP313 3.3 130.6 1.0 O3G K:ATP501 3.5 126.2 1.0 O1G K:ATP501 3.7 127.4 1.0 O1B K:ATP501 3.7 117.0 1.0 PA K:ATP501 3.8 127.5 1.0 O1A K:ATP501 3.8 119.4 1.0 NH1 L:ARG339 3.9 105.6 1.0 N K:THR220 3.9 103.5 1.0 CA K:THR220 4.2 101.8 1.0 NH2 L:ARG342 4.2 124.7 1.0 CG2 K:THR220 4.3 100.7 1.0 NH2 L:ARG339 4.4 118.7 1.0 O5' K:ATP501 4.5 128.4 1.0 CG L:ASP313 4.5 125.3 1.0 NZ K:LYS219 4.6 117.6 1.0 CZ L:ARG339 4.6 113.4 1.0 O2A K:ATP501 4.9 126.9 1.0

Magnesium binding site 3 out of 5 in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg502 b:110.1 occ:1.00 O3B L:ATP501 2.0 109.8 1.0 O2B L:ATP501 2.3 111.3 1.0 PG L:ATP501 2.5 125.1 1.0 OG1 L:THR229 2.5 95.3 1.0 O1G L:ATP501 2.5 124.1 1.0 PB L:ATP501 2.6 107.6 1.0 O2G L:ATP501 2.7 123.0 1.0 OE2 L:GLU282 3.1 126.5 1.0 CB L:THR229 3.2 99.0 1.0 O3A L:ATP501 3.3 98.8 1.0 O3G L:ATP501 3.9 121.4 1.0 O1B L:ATP501 3.9 102.5 1.0 N L:THR229 4.1 97.8 1.0 NH2 M:ARG342 4.2 101.6 1.0 CA L:THR229 4.2 99.5 1.0 NZ L:LYS228 4.2 105.5 1.0 CG2 L:THR229 4.3 100.0 1.0 CD L:GLU282 4.3 131.1 1.0 OD1 L:ASP281 4.5 114.8 1.0 PA L:ATP501 4.7 100.4 1.0 OE1 L:GLU282 4.8 133.0 1.0 C L:LYS228 4.9 96.2 1.0 OD2 L:ASP281 4.9 118.7 1.0

Magnesium binding site 4 out of 5 in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:67.2 occ:1.00 O3G H:ATP501 2.0 104.2 1.0 O2B H:ATP501 2.0 107.1 1.0 O3B H:ATP501 2.0 100.2 1.0 PB H:ATP501 2.3 109.2 1.0 PG H:ATP501 2.5 117.8 1.0 O3A H:ATP501 2.7 114.0 1.0 OG1 H:THR257 2.9 99.7 1.0 O2G H:ATP501 3.6 118.6 1.0 O1G H:ATP501 3.6 124.0 1.0 CB H:THR257 3.7 98.4 1.0 O1B H:ATP501 3.7 107.0 1.0 NH2 I:ARG343 4.0 109.6 1.0 PA H:ATP501 4.1 115.0 1.0 OE2 H:GLU310 4.4 137.8 1.0 O1A H:ATP501 4.4 116.8 1.0 N H:THR257 4.5 100.1 1.0 OD2 I:ASP314 4.6 131.4 1.0 CG I:ASP314 4.7 126.5 1.0 CG2 H:THR257 4.8 104.6 1.0 O2A H:ATP501 4.8 111.8 1.0 OD1 I:ASP314 4.8 131.9 1.0 CA H:THR257 4.8 100.0 1.0

Magnesium binding site 5 out of 5 in the Yeast 26S Proteasome Non-Substrate-Engaged (S1 State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast 26S Proteasome Non-Substrate-Engaged (S1 State) within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg502 b:77.4 occ:1.00 O3B M:ATP501 2.0 125.5 1.0 O3G M:ATP501 2.1 121.9 1.0 O2B M:ATP501 2.3 122.7 1.0 OG1 M:THR229 2.3 86.9 1.0 PB M:ATP501 2.5 132.0 1.0 O1A M:ATP501 2.5 127.9 1.0 PG M:ATP501 2.5 128.4 1.0 CB M:THR229 2.8 86.6 1.0 O3A M:ATP501 2.9 128.5 1.0 PA M:ATP501 3.1 127.6 1.0 O2A M:ATP501 3.5 111.6 1.0 O2G M:ATP501 3.5 123.2 1.0 N M:THR229 3.6 87.9 1.0 O1G M:ATP501 3.7 130.7 1.0 CA M:THR229 3.8 86.5 1.0 O1B M:ATP501 3.9 131.1 1.0 CG2 M:THR229 3.9 84.6 1.0 C M:LYS228 4.5 90.5 1.0 O5' M:ATP501 4.5 119.8 1.0 CB M:LYS228 4.8 83.3 1.0 NZ M:LYS228 5.0 95.7 1.0 C M:THR229 5.0 90.9 1.0 N M:LYS228 5.0 89.7 1.0

E.M.Lopez-Alfonzo, A.Saurabh, S.Zarafshan, C.L.Gee, C.Arkinson, S.Presse, A.Martin. Substrate-Interacting Pore Loops of Two Atpase Subunits Determine the Degradation Efficiency of the 26S Proteasome To Be Published.