Magnesium in PDB 9chn: P. Vulgaris Trimeric Higba- Operator 2 Dna

The structure of P. Vulgaris Trimeric Higba- Operator 2 Dna, PDB code: 9chn was solved by I.J.Pavelich, M.A.Schureck, E.D.Hoffer, C.M.Dunham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.98 / 2.80
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	139.82, 139.82, 80.8, 90, 90, 90
R / Rfree (%)	17.4 / 21.8

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the P. Vulgaris Trimeric Higba- Operator 2 Dna (pdb code 9chn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the P. Vulgaris Trimeric Higba- Operator 2 Dna, PDB code: 9chn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:28.5 occ:1.00 O A:LEU90 2.1 50.3 1.0 O A:HOH307 2.1 36.4 1.0 O A:HOH312 2.1 32.3 1.0 O A:HOH306 2.1 31.2 1.0 O A:GLY92 2.1 56.5 1.0 C A:GLY92 3.2 46.2 1.0 C A:LEU90 3.3 43.3 1.0 N A:GLY92 3.4 46.7 1.0 C A:TYR91 3.8 41.2 1.0 CA A:GLY92 3.8 44.6 1.0 N A:TYR91 4.2 44.4 1.0 CA A:TYR91 4.2 39.6 1.0 CA A:LEU90 4.4 39.1 1.0 N A:GLU93 4.4 55.4 1.0 O A:TYR91 4.4 53.3 1.0 CB A:LEU90 4.4 40.5 1.0 O A:HOH303 4.5 47.1 1.0 CG A:LEU90 4.7 49.8 1.0 CG1 A:VAL89 4.7 40.6 1.0 N A:LEU90 4.7 39.2 1.0 CA A:GLU93 4.8 56.2 1.0 C A:GLU93 5.0 67.2 1.0

Magnesium binding site 2 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:69.7 occ:1.00 O A:HOH328 2.1 72.6 1.0 O D:HOH209 2.1 68.5 1.0 O D:HOH206 2.1 66.8 1.0 O A:LYS45 2.1 70.2 1.0 O A:HOH320 2.9 67.8 1.0 C A:LYS45 3.2 31.3 1.0 OP2 D:DA13 3.6 50.2 1.0 N A:THR46 4.1 33.0 1.0 CA A:LYS45 4.1 39.7 1.0 CA A:THR46 4.2 35.1 1.0 OP1 D:DA13 4.3 61.6 1.0 P D:DA13 4.5 51.1 1.0 CG2 A:THR46 4.7 30.7 1.0 CB A:LYS45 4.8 37.2 1.0 O A:HOH317 4.8 48.2 1.0

Magnesium binding site 3 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:59.2 occ:1.00 O B:ASP38 2.0 109.9 1.0 O B:HOH202 2.1 57.3 1.0 O C:HOH230 2.1 66.8 1.0 O B:HOH205 2.1 62.8 1.0 O B:HOH204 2.1 62.3 1.0 O B:MET0 3.2 111.7 1.0 C B:ASP38 3.3 82.4 1.0 C B:MET0 3.6 116.1 1.0 O B:HOH211 3.7 73.9 1.0 N B:MET1 3.8 115.1 1.0 CA B:MET1 3.8 112.5 1.0 OD2 B:ASP38 3.9 89.4 1.0 N B:MET0 4.0 118.4 1.0 CA B:THR39 4.1 64.0 1.0 N B:THR39 4.1 65.1 1.0 CG B:ASP38 4.2 90.7 1.0 CA B:ASP38 4.3 76.7 1.0 CB B:MET1 4.3 119.2 1.0 O B:HOH201 4.4 67.5 1.0 O B:THR39 4.4 70.7 1.0 CA B:MET0 4.4 121.2 1.0 C B:THR39 4.5 67.1 1.0 OD1 B:ASP38 4.6 99.8 1.0 OE1 C:GLU65 4.6 86.3 1.0 CB B:ASP38 4.7 81.3 1.0 O B:ALA40 4.9 86.8 1.0

Magnesium binding site 4 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:112.8 occ:1.00 O D:HOH233 2.1 105.5 1.0 O E:HOH204 2.1 113.9 1.0 O D:HOH220 2.1 107.8 1.0 C5' E:DT19 4.2 104.1 1.0 O4' E:DT19 4.2 86.6 1.0 C4' E:DT19 4.2 93.9 1.0 O D:HOH211 4.4 63.2 1.0 O4' D:DA6 4.5 72.5 1.0 N3 E:DA18 4.7 83.2 1.0 C4' D:DA6 4.8 67.2 1.0 C5' D:DA6 4.9 62.3 1.0 O2 D:DT5 4.9 56.0 1.0

Magnesium binding site 5 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg102 b:110.7 occ:1.00 O E:HOH233 2.1 116.1 1.0 O D:HOH240 2.1 101.0 1.0 O D:HOH234 2.1 106.4 1.0 O D:HOH227 2.1 107.6 1.0 O4' D:DT14 4.1 52.5 1.0 C4' D:DT14 4.4 49.4 1.0 C5' E:DG11 4.6 82.0 1.0 N3 D:DA13 4.6 49.6 1.0 O E:HOH213 4.7 67.2 1.0 O4' E:DG11 4.7 76.0 1.0 C4' E:DG11 4.8 76.0 1.0 C5' D:DT14 4.8 44.7 1.0 O4' E:DG10 4.8 69.6 1.0 N3 E:DG10 4.9 49.2 1.0 C2 D:DA13 4.9 45.0 1.0

Magnesium binding site 6 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg101 b:85.7 occ:1.00 O D:HOH214 2.1 68.9 1.0 O E:HOH244 2.1 85.2 1.0 O E:HOH243 2.1 81.8 1.0 O D:HOH239 2.1 93.5 1.0 O E:HOH230 2.2 93.2 1.0 O E:HOH246 2.4 71.6 1.0 N2 E:DG15 4.6 57.8 1.0 O E:HOH232 4.6 62.1 1.0 O4' E:DT16 4.7 59.1 1.0 C5' D:DC9 4.7 79.8 1.0 N3 E:DG15 4.8 57.4 1.0 C4' D:DC9 4.8 69.8 1.0 C4' E:DT16 4.8 60.1 1.0 N3 D:DA8 4.9 66.0 1.0 O4' D:DC9 4.9 66.2 1.0 C5' E:DT16 5.0 56.9 1.0

Magnesium binding site 7 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg102 b:89.7 occ:1.00 O D:HOH232 2.1 90.5 1.0 O E:HOH220 2.1 82.2 1.0 O E:HOH240 2.1 78.2 1.0 O D:HOH218 2.1 92.0 1.0 N2 E:DG13 4.0 71.9 1.0 O4' E:DT14 4.2 44.6 1.0 N3 E:DG13 4.4 45.9 1.0 C4' E:DT14 4.6 43.6 1.0 N3 D:DA10 4.6 55.5 1.0 C2 E:DG13 4.7 53.7 1.0 C5' E:DT14 4.9 42.4 1.0

Magnesium binding site 8 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg103 b:65.0 occ:1.00 O E:HOH248 2.1 66.9 1.0 O E:HOH239 2.1 65.1 1.0 C4' E:DA20 4.4 105.9 1.0 C5' E:DA20 4.7 112.0 1.0 O E:HOH242 4.8 51.4 1.0 O3' E:DA20 4.9 98.5 1.0

Magnesium binding site 9 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg104 b:90.7 occ:1.00 O E:HOH235 2.1 93.1 1.0 O E:HOH221 2.1 81.4 1.0 O D:HOH242 2.1 87.4 1.0 O D:HOH231 2.1 100.8 1.0 O D:HOH213 2.1 88.3 1.0 O D:HOH241 2.3 94.5 1.0 O E:HOH247 2.8 87.6 1.0 O D:HOH216 4.2 61.0 1.0 N2 D:DG15 4.3 47.6 1.0 N3 D:DG15 4.4 50.1 1.0 C4' E:DT9 4.6 65.0 1.0 N3 E:DA8 4.6 57.2 1.0 C5' E:DT9 4.7 69.3 1.0 O4' E:DT9 4.8 59.9 1.0 C2 D:DG15 4.8 46.5 1.0 O4' D:DT16 4.8 49.6 1.0 C2 E:DA8 5.0 52.2 1.0

Magnesium binding site 10 out of 12 in the P. Vulgaris Trimeric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of P. Vulgaris Trimeric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg105 b:60.9 occ:1.00 O E:HOH222 2.1 48.6 1.0 O E:HOH234 2.1 60.0 1.0 O D:HOH229 2.1 49.5 1.0 O D:HOH238 2.1 54.7 1.0 O E:HOH238 2.1 61.7 1.0 O D:HOH212 2.1 63.0 1.0 O D:HOH223 4.4 74.0 1.0 O4' E:DT5 4.5 36.7 1.0 O4' D:DT19 4.6 44.7 1.0 C4' E:DT5 4.6 36.2 1.0 C4' D:DT19 4.7 40.2 1.0 O4' E:DA6 4.7 51.6 1.0 N3 D:DA18 4.9 46.9 1.0 O2 E:DT5 4.9 40.9 1.0 C5' E:DA6 4.9 42.0 1.0

I.J.Pavelich, M.A.Schureck, E.D.Hoffer, C.M.Dunham. P. Vulgaris Trimeric Higba- Operator 2 Dna To Be Published.