Magnesium in PDB 9dso: Cryo-Em Structure of Saccharomyces Cerevisiae RAT1-RAI1-RTT103 Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of Saccharomyces Cerevisiae RAT1-RAI1-RTT103 Complex (pdb code 9dso). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Saccharomyces Cerevisiae RAT1-RAI1-RTT103 Complex, PDB code: 9dso:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Saccharomyces Cerevisiae RAT1-RAI1-RTT103 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae RAT1-RAI1-RTT103 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:25.8 occ:1.00 OD2 B:ASP223 2.3 42.5 1.0 O B:LEU242 2.5 46.4 1.0 OE2 B:GLU241 2.8 45.9 1.0 OE2 B:GLU172 3.1 50.6 1.0 CG B:ASP223 3.1 46.0 1.0 OD1 B:ASP223 3.3 57.1 1.0 C B:LEU242 3.7 29.2 1.0 CD B:GLU241 3.8 52.8 1.0 CD B:GLU172 3.9 56.1 1.0 CE B:LYS243 4.2 43.2 1.0 N B:LEU242 4.2 36.5 1.0 CD B:LYS243 4.3 37.9 1.0 CA B:LEU242 4.4 23.6 1.0 OE1 B:GLU172 4.5 53.6 1.0 OE1 B:GLU241 4.6 57.6 1.0 CB B:ASP223 4.6 32.3 1.0 CG B:GLU241 4.7 36.5 1.0 CB B:LEU242 4.7 36.8 1.0 CG B:LYS243 4.7 27.1 1.0 N B:LYS243 4.7 34.1 1.0 CG B:GLU172 4.8 45.2 1.0 CA B:LYS243 4.9 36.6 1.0

H.F.Chu, L.Tong. Molecular Basis For the Interaction Between Saccharomyces Cerevisiae RTT103 and the RAT1-RAI1 Complex. Nat Commun V. 16 3266 2025.
ISSN: ESSN 2041-1723
PubMed: 40188244
DOI: 10.1038/S41467-025-58671-Z