Magnesium in PDB 9e0k: Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp (pdb code 9e0k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp, PDB code: 9e0k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4802 b:67.2 occ:1.00 O2B A:ADP4801 2.0 76.7 1.0 OD2 A:ASP1958 2.1 80.2 1.0 CG2 A:THR1913 2.4 66.2 1.0 CG A:ASP1958 2.7 77.9 1.0 CB A:THR1913 2.7 62.8 1.0 OD1 A:ASP1958 2.8 81.1 1.0 O3B A:ADP4801 2.8 75.7 1.0 PB A:ADP4801 2.9 90.0 1.0 CG2 A:THR2017 3.6 63.6 1.0 O3A A:ADP4801 3.7 73.2 1.0 N A:THR1913 3.7 62.0 1.0 OG1 A:THR1913 3.7 66.8 1.0 CA A:THR1913 3.8 60.1 1.0 CB A:ASP1958 4.1 63.6 1.0 O1B A:ADP4801 4.2 75.1 1.0 CB A:THR2017 4.3 58.9 1.0 NH2 A:ARG2358 4.6 72.2 1.0 OG1 A:THR2017 4.7 59.8 1.0 O2A A:ADP4801 4.7 64.8 1.0 PA A:ADP4801 4.9 62.8 1.0 OD2 A:ASP2320 5.0 73.3 1.0 C A:LYS1912 5.0 64.2 1.0 CA A:ASP1958 5.0 57.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4804 b:63.4 occ:1.00 O2B A:ATP4803 2.0 68.2 1.0 O1G A:ATP4803 2.0 70.0 1.0 OG A:SER2231 2.1 65.4 1.0 O3B A:ATP4803 2.5 62.1 1.0 OE2 A:GLU2344 2.6 64.4 1.0 PB A:ATP4803 2.6 66.4 1.0 PG A:ATP4803 2.7 68.7 1.0 O3A A:ATP4803 3.0 64.2 1.0 CB A:SER2231 3.3 62.3 1.0 OE2 A:GLU2688 3.7 75.8 1.0 O3G A:ATP4803 3.8 63.8 1.0 CD A:GLU2344 3.8 64.3 1.0 O2G A:ATP4803 3.8 69.5 1.0 O1B A:ATP4803 4.0 68.1 1.0 PA A:ATP4803 4.1 72.6 1.0 N A:SER2231 4.3 58.1 1.0 O2A A:ATP4803 4.3 70.7 1.0 CA A:SER2231 4.4 60.4 1.0 O1A A:ATP4803 4.4 67.6 1.0 OE1 A:GLU2344 4.6 65.8 1.0 CD A:GLU2688 4.7 70.2 1.0 NH2 A:ARG2729 4.7 64.5 1.0 CG A:LYS2230 4.7 59.9 1.0 CG A:GLU2344 4.7 59.4 1.0 NH1 A:ARG2726 4.7 66.6 1.0 OE1 A:GLU2688 4.9 69.6 1.0 OD2 A:ASP2304 5.0 72.1 1.0

K.H.V.Nguyen, A.A.Kendrick, A.E.Leschziner. Cryo-Em Structure of Pre-Chi Dynein Bound to LIS1 To Be Published.