Magnesium in PDB 9e0t: Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp (pdb code 9e0t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp, PDB code: 9e0t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4802 b:119.6 occ:1.00 O2B A:ADP4801 2.0 114.9 1.0 OD1 A:ASP1958 2.0 125.7 1.0 OD2 A:ASP1958 2.1 131.3 1.0 CG A:ASP1958 2.3 126.8 1.0 NH2 A:ARG2358 3.4 121.0 1.0 PB A:ADP4801 3.5 131.4 1.0 CG2 A:THR1913 3.6 111.4 1.0 CB A:ASP1958 3.6 112.5 1.0 OE2 A:GLU1959 4.1 135.3 1.0 O3B A:ADP4801 4.1 122.6 1.0 CB A:THR1913 4.1 104.6 1.0 O3A A:ADP4801 4.3 114.8 1.0 O1B A:ADP4801 4.5 125.3 1.0 CZ A:ARG2358 4.7 115.5 1.0 CG2 A:THR2017 4.7 106.1 1.0 OG1 A:THR1913 4.7 110.7 1.0 CA A:ASP1958 4.8 105.5 1.0 CG A:GLU1959 4.8 121.7 1.0 CD A:GLU1959 4.9 134.9 1.0 OD2 A:ASP2320 5.0 130.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4804 b:120.5 occ:1.00 O1G A:ATP4803 2.0 118.1 1.0 OG A:SER2231 2.0 114.5 1.0 O2B A:ATP4803 2.1 119.6 1.0 OE2 A:GLU2344 2.1 118.9 1.0 CB A:SER2231 2.9 108.0 1.0 PB A:ATP4803 2.9 113.3 1.0 PG A:ATP4803 3.0 125.1 1.0 O3B A:ATP4803 3.0 114.0 1.0 O3A A:ATP4803 3.2 103.4 1.0 CD A:GLU2344 3.3 114.5 1.0 N A:SER2231 3.9 101.1 1.0 CA A:SER2231 4.0 104.0 1.0 OE1 A:GLU2344 4.0 117.2 1.0 O2G A:ATP4803 4.0 125.0 1.0 PA A:ATP4803 4.0 118.1 1.0 O1A A:ATP4803 4.1 112.5 1.0 OE2 A:GLU2688 4.1 122.5 1.0 O3G A:ATP4803 4.1 115.4 1.0 O2A A:ATP4803 4.2 123.1 1.0 CG A:GLU2344 4.3 105.6 1.0 O1B A:ATP4803 4.3 117.0 1.0 CG A:LYS2230 4.5 98.5 1.0 OD2 A:ASP2304 4.6 123.3 1.0 CD A:GLU2688 4.9 119.0 1.0 NH2 A:ARG2726 4.9 117.2 1.0 OD1 A:ASP2304 5.0 120.7 1.0

K.H.V.Nguyen, A.A.Kendrick, A.E.Leschziner. Cryo-Em Structure of Pre-Chi Dynein Bound to LIS1 To Be Published.