Magnesium in PDB 9e0u: Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp (pdb code 9e0u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp, PDB code: 9e0u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4803 b:80.2 occ:1.00 O1G A:ATP4802 2.0 79.3 1.0 O2B A:ATP4802 2.0 84.9 1.0 OE2 A:GLU2344 2.1 81.3 1.0 OG A:SER2231 2.1 82.1 1.0 O3B A:ATP4802 2.9 79.1 1.0 PG A:ATP4802 2.9 80.9 1.0 PB A:ATP4802 3.0 85.6 1.0 CB A:SER2231 3.2 76.8 1.0 CD A:GLU2344 3.3 79.5 1.0 O3A A:ATP4802 3.7 76.9 1.0 NH2 A:ARG2729 3.8 75.2 1.0 O3G A:ATP4802 3.9 75.7 1.0 O2A A:ATP4802 3.9 82.1 1.0 OE1 A:GLU2344 4.0 84.8 1.0 O2G A:ATP4802 4.1 85.6 1.0 N A:SER2231 4.1 69.8 1.0 O1B A:ATP4802 4.3 82.4 1.0 CA A:SER2231 4.3 73.0 1.0 CG A:GLU2344 4.3 73.4 1.0 CG A:LYS2230 4.4 70.8 1.0 OE1 A:GLU2688 4.5 83.4 1.0 PA A:ATP4802 4.5 84.4 1.0 OE2 A:GLU2688 4.8 85.7 1.0 OD2 A:ASP2304 4.8 82.2 1.0 CZ A:ARG2729 4.9 75.5 1.0 NH2 A:ARG2684 4.9 75.7 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4806 b:90.6 occ:1.00 O2B A:ADP4801 2.0 92.6 1.0 OD2 A:ASP1958 2.0 102.5 1.0 OD1 A:ASP1958 2.1 107.4 1.0 CG A:ASP1958 2.3 103.4 1.0 CG2 A:THR1913 3.1 78.8 1.0 PB A:ADP4801 3.1 106.3 1.0 O3A A:ADP4801 3.5 90.3 1.0 CB A:THR1913 3.7 75.0 1.0 O3B A:ADP4801 3.7 90.8 1.0 CG2 A:THR2017 3.7 85.2 1.0 CB A:ASP1958 3.8 90.2 1.0 NH2 A:ARG2358 4.2 88.4 1.0 O1B A:ADP4801 4.4 101.6 1.0 CB A:THR2017 4.5 80.4 1.0 OG1 A:THR1913 4.5 75.1 1.0 CA A:ASP1958 4.6 80.7 1.0 N A:THR1913 4.7 78.4 1.0 CA A:THR1913 4.8 74.6 1.0 PA A:ADP4801 4.8 80.7 1.0 O2A A:ADP4801 4.9 79.4 1.0 OE2 A:GLU1959 5.0 108.8 1.0

K.H.V.Nguyen, A.A.Kendrick, A.E.Leschziner. Cryo-Em Structure of Pre-Chi Dynein Bound to LIS1 To Be Published.