Magnesium in PDB 9e0w: Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp (pdb code 9e0w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp, PDB code: 9e0w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4803 b:61.7 occ:1.00 O1G A:ATP4802 2.0 62.8 1.0 O2B A:ATP4802 2.0 62.6 1.0 OG A:SER2231 2.0 60.4 1.0 OE2 A:GLU2344 2.1 63.6 1.0 PG A:ATP4802 2.7 66.0 1.0 PB A:ATP4802 2.9 56.8 1.0 O3B A:ATP4802 2.9 59.7 1.0 O3G A:ATP4802 3.2 60.9 1.0 O3A A:ATP4802 3.3 56.5 1.0 CB A:SER2231 3.3 56.2 1.0 CD A:GLU2344 3.3 64.4 1.0 OE2 A:GLU2688 3.8 70.7 1.0 OE1 A:GLU2344 4.0 69.5 1.0 N A:SER2231 4.1 56.6 1.0 O2G A:ATP4802 4.1 66.4 1.0 CA A:SER2231 4.2 55.3 1.0 O1B A:ATP4802 4.2 59.4 1.0 PA A:ATP4802 4.3 61.9 1.0 NH2 A:ARG2684 4.4 63.0 1.0 CG A:GLU2344 4.4 56.2 1.0 O2A A:ATP4802 4.5 63.8 1.0 O1A A:ATP4802 4.6 63.5 1.0 CG A:LYS2230 4.6 54.9 1.0 CD A:GLU2688 4.7 68.0 1.0 OD2 A:ASP2304 4.8 67.0 1.0 OE1 A:GLU2688 4.9 68.7 1.0 C A:LYS2230 4.9 56.2 1.0 OD1 A:ASP2304 4.9 67.2 1.0 NH1 A:ARG2726 4.9 59.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Cytoplasmic Dynein-1 Bound to LIS1 in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4806 b:65.7 occ:1.00 O2B A:ADP4801 2.0 70.5 1.0 OG1 A:THR1913 2.2 68.8 1.0 O3B A:ADP4801 2.2 68.2 1.0 PB A:ADP4801 2.4 74.6 1.0 OD1 A:ASP1958 2.7 85.2 1.0 OD2 A:ASP1958 2.7 83.3 1.0 CG A:ASP1958 2.9 83.6 1.0 CG2 A:THR2017 3.1 67.8 1.0 O1B A:ADP4801 3.2 71.5 1.0 CB A:THR1913 3.6 60.9 1.0 O3A A:ADP4801 3.8 71.3 1.0 CB A:THR2017 4.1 64.1 1.0 CB A:ASP1958 4.2 74.6 1.0 N A:THR1913 4.3 58.3 1.0 NH2 A:ARG2358 4.4 67.8 1.0 OE2 A:GLU1959 4.4 90.4 1.0 OG1 A:THR2017 4.4 63.4 1.0 CG2 A:THR1913 4.5 63.3 1.0 CA A:THR1913 4.5 55.6 1.0 CE A:LYS1912 4.8 56.1 1.0 PA A:ADP4801 4.9 66.7 1.0 CA A:ASP1958 4.9 66.0 1.0

K.H.V.Nguyen, A.A.Kendrick, A.E.Leschziner. Cryo-Em Structure of Pre-Chi Dynein Bound to LIS1 To Be Published.