Magnesium in PDB 9e9b: Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound

All present enzymatic activity of Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound:
2.2.1.9;

The structure of Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound, PDB code: 9e9b was solved by M.Klein, F.M.Given, N.A.T.Ho, T.M.Allison, J.M.Johnston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.57 / 2.61
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	176.025, 176.025, 100.144, 90, 90, 120
R / Rfree (%)	19.9 / 23.5

The binding sites of Magnesium atom in the Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound (pdb code 9e9b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound, PDB code: 9e9b:

Magnesium binding site 1 out of 1 in the Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L. Monocytogenes Mend with MG2+ and Thdp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:54.2 occ:1.00 OD1 A:ASP459 2.0 54.0 1.0 OD1 A:ASN486 2.1 60.7 1.0 O3B A:TPP601 2.1 63.7 1.0 O2A A:TPP601 2.1 47.8 1.0 O A:GLY488 2.6 57.5 1.0 CG A:ASN486 2.9 56.9 1.0 PB A:TPP601 3.1 62.6 1.0 CG A:ASP459 3.2 50.1 1.0 ND2 A:ASN486 3.3 60.1 1.0 PA A:TPP601 3.3 47.8 1.0 O3A A:TPP601 3.4 51.2 1.0 N A:ASP459 3.6 39.8 1.0 O1B A:TPP601 3.6 70.0 1.0 C A:GLY488 3.8 61.9 1.0 O A:VAL484 3.8 55.1 1.0 OD2 A:ASP459 3.9 52.3 1.0 N A:ASN486 4.1 51.0 1.0 O7 A:TPP601 4.1 50.3 1.0 CB A:ASP459 4.2 49.1 1.0 CA A:GLY458 4.2 42.5 1.0 N A:LEU460 4.3 42.8 1.0 CB A:ASN486 4.3 60.5 1.0 N A:GLY488 4.3 57.0 1.0 C A:GLY458 4.4 42.7 1.0 CA A:ASP459 4.4 45.9 1.0 N A:GLY490 4.4 59.6 1.0 O2B A:TPP601 4.4 56.1 1.0 O1A A:TPP601 4.5 46.5 1.0 CA A:ASN486 4.6 54.9 1.0 N A:ASP487 4.6 57.9 1.0 CA A:GLY489 4.7 56.8 1.0 N A:GLY489 4.7 61.3 1.0 CA A:GLY488 4.7 61.7 1.0 C A:ASN486 4.7 56.0 1.0 C A:ASP459 4.9 45.9 1.0 C A:VAL484 5.0 48.5 1.0

M.Bailey, F.M.Given, N.A.T.Ho, F.G.Pearce, T.M.Allison, J.M.Johnston. Structures of Listeria Monocytogenes Mend in Thdp-Bound and in-Crystallo Captured Intermediate I-Bound Forms. Acta Crystallogr.,Sect.F 2025.
ISSN: ESSN 2053-230X
PubMed: 40673487
DOI: 10.1107/S2053230X25006181