Magnesium in PDB 9exo: Wzc-K540M-2YE Mgadp C1

The binding sites of Magnesium atom in the Wzc-K540M-2YE Mgadp C1 (pdb code 9exo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Wzc-K540M-2YE Mgadp C1, PDB code: 9exo:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1001 b:57.2 occ:1.00 O1B H:ADP1000 1.9 62.1 1.0 OG1 H:THR541 2.4 54.9 1.0 PB H:ADP1000 3.4 62.1 1.0 OD2 H:ASP642 3.5 53.3 1.0 CB H:THR541 3.7 54.9 1.0 OD1 H:ASP642 3.9 53.3 1.0 OD2 H:ASP564 4.0 57.9 1.0 N H:THR541 4.0 54.9 1.0 O2B H:ADP1000 4.1 62.1 1.0 CG H:ASP642 4.1 53.3 1.0 O3B H:ADP1000 4.1 62.1 1.0 OH G:TYR715 4.3 66.8 1.0 CB H:MET540 4.3 53.5 1.0 CA H:THR541 4.4 54.9 1.0 O3A H:ADP1000 4.5 62.1 1.0 O H:THR643 4.5 48.7 1.0 O1A H:ADP1000 4.7 62.1 1.0 CG2 H:THR541 4.8 54.9 1.0 CE H:MET540 4.8 53.5 1.0 C H:MET540 4.8 53.5 1.0 CG H:ASP564 4.9 57.9 1.0

Magnesium binding site 2 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:57.8 occ:1.00 O1B A:ADP1000 1.9 58.1 1.0 OG1 A:THR541 2.3 52.1 1.0 OD2 A:ASP642 3.3 52.8 1.0 PB A:ADP1000 3.4 58.1 1.0 CB A:THR541 3.6 52.1 1.0 OD2 A:ASP564 3.7 55.9 1.0 OD1 A:ASP642 3.9 52.8 1.0 O3B A:ADP1000 3.9 58.1 1.0 O2B A:ADP1000 4.0 58.1 1.0 CG A:ASP642 4.0 52.8 1.0 N A:THR541 4.1 52.1 1.0 OH H:TYR715 4.3 65.4 1.0 CA A:THR541 4.4 52.1 1.0 O3A A:ADP1000 4.6 58.1 1.0 CB A:MET540 4.6 50.3 1.0 CG2 A:THR541 4.6 52.1 1.0 CG A:ASP564 4.7 55.9 1.0 O A:THR643 4.7 48.9 1.0 O1A A:ADP1000 4.8 58.1 1.0 CB A:ASP564 4.9 55.9 1.0 C A:MET540 5.0 50.3 1.0

Magnesium binding site 3 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:59.3 occ:1.00 O1B B:ADP1000 2.0 60.0 1.0 OG1 B:THR541 2.4 55.0 1.0 PB B:ADP1000 3.5 60.0 1.0 OD2 B:ASP642 3.5 54.6 1.0 OD2 B:ASP564 3.6 56.4 1.0 CB B:THR541 3.7 55.0 1.0 O2B B:ADP1000 4.1 60.0 1.0 OD1 B:ASP642 4.2 54.6 1.0 OH A:TYR715 4.2 65.2 1.0 N B:THR541 4.2 55.0 1.0 CG B:ASP642 4.3 54.6 1.0 O3B B:ADP1000 4.3 60.0 1.0 O3A B:ADP1000 4.4 60.0 1.0 CA B:THR541 4.5 55.0 1.0 CG2 B:THR541 4.6 55.0 1.0 CG B:ASP564 4.7 56.4 1.0 O B:THR643 4.8 49.7 1.0 CB B:MET540 4.8 52.4 1.0 O1A B:ADP1000 4.8 60.0 1.0 CE B:MET540 4.9 52.4 1.0 CB B:ASP564 4.9 56.4 1.0 O2A B:ADP1000 5.0 60.0 1.0

Magnesium binding site 4 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:61.3 occ:1.00 O1B C:ADP1000 2.0 59.3 1.0 OG1 C:THR541 2.3 54.1 1.0 PB C:ADP1000 3.5 59.3 1.0 OD2 C:ASP642 3.5 55.2 1.0 OD2 C:ASP564 3.6 57.9 1.0 CB C:THR541 3.6 54.1 1.0 O2B C:ADP1000 4.1 59.3 1.0 OD1 C:ASP642 4.1 55.2 1.0 N C:THR541 4.2 54.1 1.0 CG C:ASP642 4.3 55.2 1.0 O3B C:ADP1000 4.3 59.3 1.0 O3A C:ADP1000 4.4 59.3 1.0 OH B:TYR715 4.4 68.0 1.0 CA C:THR541 4.5 54.1 1.0 CG2 C:THR541 4.6 54.1 1.0 CG C:ASP564 4.7 57.9 1.0 O1A C:ADP1000 4.7 59.3 1.0 CB C:MET540 4.7 51.2 1.0 CE2 C:TYR569 4.8 78.5 1.0 O C:THR643 4.8 50.4 1.0 PA C:ADP1000 4.9 59.3 1.0 O2A C:ADP1000 5.0 59.3 1.0 CB C:ASP564 5.0 57.9 1.0

Magnesium binding site 5 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:55.8 occ:1.00 O1B D:ADP1000 2.0 57.4 1.0 OG1 D:THR541 2.4 50.6 1.0 PB D:ADP1000 3.5 57.4 1.0 OD2 D:ASP564 3.5 55.4 1.0 OD2 D:ASP642 3.5 52.6 1.0 CB D:THR541 3.7 50.6 1.0 OD1 D:ASP642 4.1 52.6 1.0 O2B D:ADP1000 4.2 57.4 1.0 N D:THR541 4.2 50.6 1.0 O3B D:ADP1000 4.2 57.4 1.0 OH C:TYR715 4.2 65.5 1.0 CG D:ASP642 4.3 52.6 1.0 CA D:THR541 4.5 50.6 1.0 O3A D:ADP1000 4.5 57.4 1.0 CG D:ASP564 4.5 55.4 1.0 CB D:MET540 4.6 49.3 1.0 CG2 D:THR541 4.7 50.6 1.0 O1A D:ADP1000 4.8 57.4 1.0 CB D:ASP564 4.8 55.4 1.0 O D:THR643 4.8 47.2 1.0

Magnesium binding site 6 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:62.1 occ:1.00 O1B E:ADP1000 2.0 55.2 1.0 OG1 E:THR541 2.4 51.5 1.0 OD2 E:ASP564 3.4 54.1 1.0 PB E:ADP1000 3.4 55.2 1.0 OD2 E:ASP642 3.6 54.6 1.0 CB E:THR541 3.7 51.5 1.0 O3B E:ADP1000 3.9 55.2 1.0 OH D:TYR715 4.2 64.8 1.0 OD1 E:ASP642 4.2 54.6 1.0 O2B E:ADP1000 4.2 55.2 1.0 N E:THR541 4.2 51.5 1.0 CG E:ASP642 4.3 54.6 1.0 CG E:ASP564 4.4 54.1 1.0 CA E:THR541 4.5 51.5 1.0 O3A E:ADP1000 4.5 55.2 1.0 CB E:MET540 4.7 49.7 1.0 CG2 E:THR541 4.7 51.5 1.0 CB E:ASP564 4.7 54.1 1.0 O1A E:ADP1000 4.8 55.2 1.0 O E:THR643 4.9 48.9 1.0

Magnesium binding site 7 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1001 b:61.2 occ:1.00 O1B F:ADP1000 2.0 59.9 1.0 OG1 F:THR541 2.6 55.2 1.0 OD2 F:ASP564 3.2 57.2 1.0 PB F:ADP1000 3.5 59.9 1.0 OD2 F:ASP642 3.7 56.2 1.0 CB F:THR541 3.8 55.2 1.0 O3B F:ADP1000 4.1 59.9 1.0 O2B F:ADP1000 4.1 59.9 1.0 N F:THR541 4.1 55.2 1.0 OH E:TYR715 4.1 68.3 1.0 OD1 F:ASP642 4.2 56.2 1.0 CG F:ASP564 4.3 57.2 1.0 CG F:ASP642 4.3 56.2 1.0 CB F:MET540 4.4 53.0 1.0 O3A F:ADP1000 4.5 59.9 1.0 CA F:THR541 4.5 55.2 1.0 CB F:ASP564 4.6 57.2 1.0 O F:THR643 4.7 51.7 1.0 O1A F:ADP1000 4.8 59.9 1.0 CE F:MET540 4.9 53.0 1.0 CG2 F:THR541 4.9 55.2 1.0 C F:MET540 5.0 53.0 1.0

Magnesium binding site 8 out of 8 in the Wzc-K540M-2YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Wzc-K540M-2YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1001 b:60.0 occ:1.00 O1B G:ADP1000 1.9 60.7 1.0 OG1 G:THR541 2.5 55.4 1.0 PB G:ADP1000 3.5 60.7 1.0 OD2 G:ASP642 3.5 55.1 1.0 OD2 G:ASP564 3.6 58.9 1.0 CB G:THR541 3.8 55.4 1.0 OD1 G:ASP642 4.0 55.1 1.0 O2B G:ADP1000 4.1 60.7 1.0 N G:THR541 4.1 55.4 1.0 O3B G:ADP1000 4.2 60.7 1.0 CG G:ASP642 4.2 55.1 1.0 OH F:TYR715 4.4 69.4 1.0 CE G:MET540 4.5 54.1 1.0 CB G:MET540 4.5 54.1 1.0 O3A G:ADP1000 4.5 60.7 1.0 CA G:THR541 4.5 55.4 1.0 CG G:ASP564 4.5 58.9 1.0 O G:THR643 4.6 51.5 1.0 O1A G:ADP1000 4.7 60.7 1.0 CB G:ASP564 4.8 58.9 1.0 CG2 G:THR541 4.8 55.4 1.0 C G:MET540 5.0 54.1 1.0

Y.Yang, J.W.Liu. Bacterial Tyrosine Kinase Wzc To Be Published.