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Magnesium in PDB 9exp: Wzc-K540M-2YE Mgadp C8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Wzc-K540M-2YE Mgadp C8 (pdb code 9exp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Wzc-K540M-2YE Mgadp C8, PDB code: 9exp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 9exp

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Magnesium binding site 1 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:32.0
occ:1.00
 O2B A:ADP1000 2.0 39.8 1.0
OG1 A:THR541 2.2 33.5 1.0
PB A:ADP1000 3.5 39.8 1.0
CB A:THR541 3.5 33.5 1.0
OD2 A:ASP642 3.6 33.9 1.0
OD2 A:ASP564 3.8 32.4 1.0
O1B A:ADP1000 4.0 39.8 1.0
N A:THR541 4.1 33.5 1.0
O3B A:ADP1000 4.2 39.8 1.0
OD1 A:ASP642 4.3 33.9 1.0
CG A:ASP642 4.3 33.9 1.0
OH H:TYR715 4.3 36.3 1.0
CA A:THR541 4.3 33.5 1.0
O3A A:ADP1000 4.5 39.8 1.0
CG2 A:THR541 4.5 33.5 1.0
O A:THR643 4.8 29.4 1.0
CB A:MET540 4.8 27.9 1.0
CG A:ASP564 4.8 32.4 1.0
CE2 A:TYR569 5.0 44.9 1.0
O1A A:ADP1000 5.0 39.8 1.0

Magnesium binding site 2 out of 8 in 9exp

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Magnesium binding site 2 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:28.8
occ:1.00
 O2B B:ADP1000 2.0 27.7 1.0
OG1 B:THR541 2.2 28.4 1.0
PB B:ADP1000 3.5 27.7 1.0
CB B:THR541 3.5 28.4 1.0
OD2 B:ASP642 3.6 29.8 1.0
OD2 B:ASP564 3.8 31.0 1.0
O1B B:ADP1000 4.0 27.7 1.0
N B:THR541 4.1 28.4 1.0
O3B B:ADP1000 4.3 27.7 1.0
OD1 B:ASP642 4.3 29.8 1.0
CG B:ASP642 4.3 29.8 1.0
CA B:THR541 4.3 28.4 1.0
OH A:TYR715 4.3 37.5 1.0
O3A B:ADP1000 4.5 27.7 1.0
CG2 B:THR541 4.5 28.4 1.0
O B:THR643 4.8 26.2 1.0
CB B:MET540 4.8 24.0 1.0
CG B:ASP564 4.8 31.0 1.0
CE2 B:TYR569 5.0 42.5 1.0
O1A B:ADP1000 5.0 27.7 1.0

Magnesium binding site 3 out of 8 in 9exp

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Magnesium binding site 3 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:31.9
occ:1.00
 O2B C:ADP1000 2.0 39.8 1.0
OG1 C:THR541 2.2 33.1 1.0
PB C:ADP1000 3.5 39.8 1.0
CB C:THR541 3.5 33.1 1.0
OD2 C:ASP642 3.6 33.8 1.0
OD2 C:ASP564 3.8 32.1 1.0
O1B C:ADP1000 4.0 39.8 1.0
N C:THR541 4.1 33.1 1.0
O3B C:ADP1000 4.3 39.8 1.0
OD1 C:ASP642 4.3 33.8 1.0
CG C:ASP642 4.3 33.8 1.0
CA C:THR541 4.3 33.1 1.0
OH B:TYR715 4.3 36.4 1.0
O3A C:ADP1000 4.5 39.8 1.0
CG2 C:THR541 4.5 33.1 1.0
O C:THR643 4.8 29.4 1.0
CB C:MET540 4.8 27.8 1.0
CG C:ASP564 4.8 32.1 1.0
CE2 C:TYR569 4.9 44.7 1.0
O1A C:ADP1000 5.0 39.8 1.0

Magnesium binding site 4 out of 8 in 9exp

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Magnesium binding site 4 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1001

b:29.0
occ:1.00
 O2B D:ADP1000 2.0 27.4 1.0
OG1 D:THR541 2.2 28.5 1.0
PB D:ADP1000 3.5 27.4 1.0
CB D:THR541 3.5 28.5 1.0
OD2 D:ASP642 3.6 29.9 1.0
OD2 D:ASP564 3.8 31.1 1.0
O1B D:ADP1000 4.0 27.4 1.0
N D:THR541 4.1 28.5 1.0
O3B D:ADP1000 4.2 27.4 1.0
OD1 D:ASP642 4.3 29.9 1.0
OH C:TYR715 4.3 37.5 1.0
CG D:ASP642 4.3 29.9 1.0
CA D:THR541 4.3 28.5 1.0
O3A D:ADP1000 4.5 27.4 1.0
CG2 D:THR541 4.5 28.5 1.0
O D:THR643 4.8 26.4 1.0
CB D:MET540 4.8 24.2 1.0
CG D:ASP564 4.8 31.1 1.0
CE2 D:TYR569 4.9 42.5 1.0
O1A D:ADP1000 5.0 27.4 1.0

Magnesium binding site 5 out of 8 in 9exp

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Magnesium binding site 5 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1001

b:26.2
occ:1.00
 O2B E:ADP1000 2.0 26.4 1.0
OG1 E:THR541 2.2 27.9 1.0
PB E:ADP1000 3.5 26.4 1.0
CB E:THR541 3.5 27.9 1.0
OD2 E:ASP642 3.6 33.4 1.0
OD2 E:ASP564 3.8 32.1 1.0
O1B E:ADP1000 4.0 26.4 1.0
N E:THR541 4.1 27.9 1.0
O3B E:ADP1000 4.3 26.4 1.0
OD1 E:ASP642 4.3 33.4 1.0
CG E:ASP642 4.3 33.4 1.0
CA E:THR541 4.3 27.9 1.0
OH D:TYR715 4.3 36.0 1.0
O3A E:ADP1000 4.5 26.4 1.0
CG2 E:THR541 4.5 27.9 1.0
O E:THR643 4.8 30.3 1.0
CB E:MET540 4.8 25.4 1.0
CG E:ASP564 4.8 32.1 1.0
CE2 E:TYR569 4.9 42.4 1.0
O1A E:ADP1000 5.0 26.4 1.0

Magnesium binding site 6 out of 8 in 9exp

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Magnesium binding site 6 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1001

b:28.7
occ:1.00
 O2B F:ADP1000 2.0 27.1 1.0
OG1 F:THR541 2.2 28.7 1.0
PB F:ADP1000 3.5 27.1 1.0
CB F:THR541 3.5 28.7 1.0
OD2 F:ASP642 3.6 30.1 1.0
OD2 F:ASP564 3.8 30.9 1.0
O1B F:ADP1000 4.0 27.1 1.0
N F:THR541 4.1 28.7 1.0
O3B F:ADP1000 4.2 27.1 1.0
OD1 F:ASP642 4.3 30.1 1.0
CG F:ASP642 4.3 30.1 1.0
CA F:THR541 4.3 28.7 1.0
OH E:TYR715 4.3 37.3 1.0
O3A F:ADP1000 4.5 27.1 1.0
CG2 F:THR541 4.5 28.7 1.0
O F:THR643 4.8 26.1 1.0
CB F:MET540 4.8 23.5 1.0
CG F:ASP564 4.8 30.9 1.0
CE2 F:TYR569 4.9 42.2 1.0
O1A F:ADP1000 5.0 27.1 1.0

Magnesium binding site 7 out of 8 in 9exp

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Magnesium binding site 7 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1001

b:26.5
occ:1.00
 O2B G:ADP1000 2.0 26.2 1.0
OG1 G:THR541 2.2 27.8 1.0
PB G:ADP1000 3.5 26.2 1.0
CB G:THR541 3.5 27.8 1.0
OD2 G:ASP642 3.6 33.2 1.0
OD2 G:ASP564 3.8 32.0 1.0
O1B G:ADP1000 4.0 26.2 1.0
N G:THR541 4.1 27.8 1.0
O3B G:ADP1000 4.3 26.2 1.0
OD1 G:ASP642 4.3 33.2 1.0
CG G:ASP642 4.3 33.2 1.0
OH F:TYR715 4.3 36.4 1.0
CA G:THR541 4.3 27.8 1.0
O3A G:ADP1000 4.5 26.2 1.0
CG2 G:THR541 4.5 27.8 1.0
O G:THR643 4.8 30.3 1.0
CB G:MET540 4.8 25.0 1.0
CG G:ASP564 4.8 32.0 1.0
CE2 G:TYR569 5.0 42.4 1.0
O1A G:ADP1000 5.0 26.2 1.0

Magnesium binding site 8 out of 8 in 9exp

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Magnesium binding site 8 out of 8 in the Wzc-K540M-2YE Mgadp C8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Wzc-K540M-2YE Mgadp C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg1001

b:28.8
occ:1.00
 O2B H:ADP1000 2.0 27.3 1.0
OG1 H:THR541 2.2 28.8 1.0
PB H:ADP1000 3.5 27.3 1.0
CB H:THR541 3.5 28.8 1.0
OD2 H:ASP642 3.6 30.1 1.0
OD2 H:ASP564 3.8 31.0 1.0
O1B H:ADP1000 4.0 27.3 1.0
N H:THR541 4.1 28.8 1.0
O3B H:ADP1000 4.2 27.3 1.0
OD1 H:ASP642 4.3 30.1 1.0
OH G:TYR715 4.3 37.3 1.0
CG H:ASP642 4.3 30.1 1.0
CA H:THR541 4.3 28.8 1.0
O3A H:ADP1000 4.5 27.3 1.0
CG2 H:THR541 4.5 28.8 1.0
O H:THR643 4.8 26.2 1.0
CB H:MET540 4.8 23.1 1.0
CG H:ASP564 4.8 31.0 1.0
CE2 H:TYR569 5.0 42.2 1.0
O1A H:ADP1000 5.0 27.3 1.0

Reference:

Y.Yang, J.W.Liu. Bacterial Tyrosine Kinase Wzc To Be Published.
Page generated: Sat Aug 16 01:34:58 2025

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