Magnesium in PDB 9gbi: Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
Enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
All present enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type:
1.97.1.12;
Other elements in 9gbi:
The structure of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
155;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
(pdb code 9gbi). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 155 binding sites of Magnesium where determined in the
Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type, PDB code: 9gbi:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 1 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg301
b:40.9
occ:1.00
|
MG
|
1:CHL301
|
0.0
|
40.9
|
1.0
|
ND
|
1:CHL301
|
2.0
|
49.1
|
1.0
|
NB
|
1:CHL301
|
2.1
|
41.7
|
1.0
|
NC
|
1:CHL301
|
2.1
|
36.8
|
1.0
|
NA
|
1:CHL301
|
2.1
|
48.8
|
1.0
|
O
|
1:TRP48
|
2.5
|
52.2
|
1.0
|
C4D
|
1:CHL301
|
3.0
|
38.0
|
1.0
|
C1B
|
1:CHL301
|
3.1
|
41.1
|
1.0
|
C4A
|
1:CHL301
|
3.1
|
46.6
|
1.0
|
C4C
|
1:CHL301
|
3.1
|
36.6
|
1.0
|
C1D
|
1:CHL301
|
3.1
|
51.5
|
1.0
|
C4B
|
1:CHL301
|
3.1
|
44.8
|
1.0
|
C1C
|
1:CHL301
|
3.1
|
44.1
|
1.0
|
C1A
|
1:CHL301
|
3.2
|
46.0
|
1.0
|
CHB
|
1:CHL301
|
3.4
|
43.6
|
1.0
|
CHA
|
1:CHL301
|
3.5
|
38.2
|
1.0
|
CHD
|
1:CHL301
|
3.5
|
50.2
|
1.0
|
CHC
|
1:CHL301
|
3.5
|
51.3
|
1.0
|
C
|
1:TRP48
|
3.6
|
46.0
|
1.0
|
C26
|
1:LHG317
|
3.8
|
48.8
|
1.0
|
C3D
|
1:CHL301
|
4.2
|
42.2
|
1.0
|
CA
|
1:TRP48
|
4.2
|
41.1
|
1.0
|
C2D
|
1:CHL301
|
4.3
|
40.9
|
1.0
|
C2B
|
1:CHL301
|
4.3
|
39.6
|
1.0
|
C3C
|
1:CHL301
|
4.3
|
33.2
|
1.0
|
C2C
|
1:CHL301
|
4.4
|
40.4
|
1.0
|
C3B
|
1:CHL301
|
4.4
|
41.2
|
1.0
|
C3A
|
1:CHL301
|
4.4
|
46.9
|
1.0
|
C2A
|
1:CHL301
|
4.4
|
48.9
|
1.0
|
C27
|
1:LHG317
|
4.5
|
50.2
|
1.0
|
C25
|
1:LHG317
|
4.6
|
51.1
|
1.0
|
N
|
1:MET49
|
4.7
|
50.4
|
1.0
|
CB
|
1:TRP48
|
4.8
|
40.7
|
1.0
|
C28
|
1:LHG317
|
4.8
|
51.8
|
1.0
|
CA
|
1:MET49
|
5.0
|
35.1
|
1.0
|
CBD
|
1:CHL301
|
5.0
|
43.4
|
1.0
|
CE3
|
1:TRP48
|
5.0
|
35.4
|
1.0
|
|
Magnesium binding site 2 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 2 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg302
b:46.2
occ:1.00
|
MG
|
1:CLA302
|
0.0
|
46.2
|
1.0
|
ND
|
1:CLA302
|
2.0
|
53.1
|
1.0
|
NB
|
1:CLA302
|
2.1
|
43.3
|
1.0
|
NC
|
1:CLA302
|
2.1
|
42.8
|
1.0
|
NA
|
1:CLA302
|
2.2
|
45.5
|
1.0
|
OE2
|
1:GLU87
|
2.7
|
30.6
|
1.0
|
C4D
|
1:CLA302
|
3.0
|
41.3
|
1.0
|
C1B
|
1:CLA302
|
3.1
|
42.4
|
1.0
|
C4A
|
1:CLA302
|
3.1
|
40.2
|
1.0
|
C1D
|
1:CLA302
|
3.1
|
44.5
|
1.0
|
C4C
|
1:CLA302
|
3.1
|
48.3
|
1.0
|
C1C
|
1:CLA302
|
3.1
|
45.4
|
1.0
|
C4B
|
1:CLA302
|
3.1
|
46.9
|
1.0
|
C1A
|
1:CLA302
|
3.2
|
39.9
|
1.0
|
CHB
|
1:CLA302
|
3.4
|
39.0
|
1.0
|
CHD
|
1:CLA302
|
3.5
|
43.9
|
1.0
|
CHA
|
1:CLA302
|
3.5
|
39.2
|
1.0
|
CHC
|
1:CLA302
|
3.5
|
42.2
|
1.0
|
CD
|
1:GLU87
|
3.6
|
45.6
|
1.0
|
CG
|
1:GLU87
|
4.0
|
26.2
|
1.0
|
C38
|
1:XAT316
|
4.0
|
38.8
|
1.0
|
C3D
|
1:CLA302
|
4.2
|
35.5
|
1.0
|
NH2
|
1:ARG196
|
4.3
|
43.1
|
1.0
|
C2D
|
1:CLA302
|
4.3
|
36.5
|
1.0
|
C2B
|
1:CLA302
|
4.3
|
43.9
|
1.0
|
NE
|
1:ARG196
|
4.3
|
39.0
|
1.0
|
C2C
|
1:CLA302
|
4.4
|
43.8
|
1.0
|
C3C
|
1:CLA302
|
4.4
|
42.2
|
1.0
|
C3B
|
1:CLA302
|
4.4
|
45.7
|
1.0
|
C3A
|
1:CLA302
|
4.4
|
34.3
|
1.0
|
C2A
|
1:CLA302
|
4.5
|
34.9
|
1.0
|
OE1
|
1:GLU87
|
4.5
|
55.5
|
1.0
|
CZ
|
1:ARG196
|
4.6
|
46.9
|
1.0
|
CB
|
1:GLU87
|
4.8
|
31.2
|
1.0
|
CBD
|
1:CLA302
|
5.0
|
41.0
|
1.0
|
|
Magnesium binding site 3 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 3 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg303
b:54.4
occ:1.00
|
MG
|
1:CLA303
|
0.0
|
54.4
|
1.0
|
ND
|
1:CLA303
|
2.0
|
55.0
|
1.0
|
NB
|
1:CLA303
|
2.1
|
40.6
|
1.0
|
NC
|
1:CLA303
|
2.1
|
45.6
|
1.0
|
NA
|
1:CLA303
|
2.2
|
46.7
|
1.0
|
NE2
|
1:HIS90
|
2.7
|
37.6
|
1.0
|
C4D
|
1:CLA303
|
3.0
|
44.1
|
1.0
|
C1B
|
1:CLA303
|
3.1
|
50.3
|
1.0
|
C4A
|
1:CLA303
|
3.1
|
43.4
|
1.0
|
C1D
|
1:CLA303
|
3.1
|
47.4
|
1.0
|
C1C
|
1:CLA303
|
3.1
|
46.7
|
1.0
|
C4C
|
1:CLA303
|
3.1
|
41.5
|
1.0
|
C4B
|
1:CLA303
|
3.1
|
35.8
|
1.0
|
C1A
|
1:CLA303
|
3.2
|
42.5
|
1.0
|
CHB
|
1:CLA303
|
3.4
|
43.4
|
1.0
|
CHD
|
1:CLA303
|
3.5
|
41.2
|
1.0
|
CHC
|
1:CLA303
|
3.5
|
39.3
|
1.0
|
CHA
|
1:CLA303
|
3.5
|
40.5
|
1.0
|
CD2
|
1:HIS90
|
3.6
|
32.7
|
1.0
|
CE1
|
1:HIS90
|
3.7
|
33.0
|
1.0
|
C3D
|
1:CLA303
|
4.2
|
40.8
|
1.0
|
C2D
|
1:CLA303
|
4.3
|
42.5
|
1.0
|
C2B
|
1:CLA303
|
4.3
|
57.3
|
1.0
|
C2C
|
1:CLA303
|
4.4
|
51.8
|
1.0
|
C3C
|
1:CLA303
|
4.4
|
48.8
|
1.0
|
C3B
|
1:CLA303
|
4.4
|
41.4
|
1.0
|
C11
|
1:CLA308
|
4.4
|
60.3
|
1.0
|
C3A
|
1:CLA303
|
4.4
|
42.4
|
1.0
|
C2A
|
1:CLA303
|
4.4
|
40.9
|
1.0
|
C12
|
1:CLA308
|
4.4
|
57.7
|
1.0
|
C10
|
1:CLA308
|
4.8
|
57.0
|
1.0
|
CG
|
1:HIS90
|
4.8
|
29.2
|
1.0
|
ND1
|
1:HIS90
|
4.8
|
44.5
|
1.0
|
CAA
|
1:CLA303
|
5.0
|
37.5
|
1.0
|
CBD
|
1:CLA303
|
5.0
|
40.0
|
1.0
|
|
Magnesium binding site 4 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 4 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg304
b:69.1
occ:1.00
|
MG
|
1:CLA304
|
0.0
|
69.1
|
1.0
|
ND
|
1:CLA304
|
2.0
|
77.6
|
1.0
|
NB
|
1:CLA304
|
2.1
|
68.1
|
1.0
|
NC
|
1:CLA304
|
2.1
|
73.2
|
1.0
|
NA
|
1:CLA304
|
2.2
|
70.5
|
1.0
|
C4D
|
1:CLA304
|
3.0
|
69.5
|
1.0
|
C1B
|
1:CLA304
|
3.1
|
67.5
|
1.0
|
C4A
|
1:CLA304
|
3.1
|
66.7
|
1.0
|
C1D
|
1:CLA304
|
3.1
|
74.0
|
1.0
|
C1C
|
1:CLA304
|
3.1
|
72.4
|
1.0
|
C4C
|
1:CLA304
|
3.1
|
72.3
|
1.0
|
C4B
|
1:CLA304
|
3.1
|
71.3
|
1.0
|
C1A
|
1:CLA304
|
3.2
|
68.8
|
1.0
|
CHB
|
1:CLA304
|
3.4
|
68.9
|
1.0
|
CHD
|
1:CLA304
|
3.5
|
72.0
|
1.0
|
CHC
|
1:CLA304
|
3.5
|
73.0
|
1.0
|
CHA
|
1:CLA304
|
3.5
|
65.8
|
1.0
|
C28
|
1:BCR318
|
3.7
|
75.4
|
1.0
|
C27
|
1:BCR318
|
4.1
|
75.5
|
1.0
|
C3D
|
1:CLA304
|
4.2
|
69.8
|
1.0
|
C2D
|
1:CLA304
|
4.3
|
71.0
|
1.0
|
C2B
|
1:CLA304
|
4.3
|
62.7
|
1.0
|
C2C
|
1:CLA304
|
4.4
|
67.9
|
1.0
|
C3C
|
1:CLA304
|
4.4
|
67.4
|
1.0
|
C3B
|
1:CLA304
|
4.4
|
69.3
|
1.0
|
C3A
|
1:CLA304
|
4.4
|
64.0
|
1.0
|
C2A
|
1:CLA304
|
4.5
|
69.3
|
1.0
|
O
|
1:GLY100
|
4.5
|
61.3
|
1.0
|
CA
|
1:GLY100
|
4.7
|
53.9
|
1.0
|
C4
|
1:XAT316
|
4.8
|
37.1
|
1.0
|
CMA
|
1:CLA304
|
4.9
|
63.5
|
1.0
|
CBD
|
1:CLA304
|
5.0
|
66.8
|
1.0
|
C29
|
1:BCR318
|
5.0
|
83.2
|
1.0
|
C
|
1:GLY100
|
5.0
|
53.6
|
1.0
|
|
Magnesium binding site 5 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 5 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg305
b:50.4
occ:1.00
|
MG
|
1:CLA305
|
0.0
|
50.4
|
1.0
|
ND
|
1:CLA305
|
2.0
|
72.9
|
1.0
|
NB
|
1:CLA305
|
2.1
|
72.1
|
1.0
|
NC
|
1:CLA305
|
2.1
|
66.5
|
1.0
|
NA
|
1:CLA305
|
2.2
|
66.1
|
1.0
|
C4D
|
1:CLA305
|
3.0
|
67.1
|
1.0
|
C1B
|
1:CLA305
|
3.1
|
72.9
|
1.0
|
C4A
|
1:CLA305
|
3.1
|
71.1
|
1.0
|
C1D
|
1:CLA305
|
3.1
|
66.6
|
1.0
|
C4C
|
1:CLA305
|
3.1
|
68.3
|
1.0
|
C1C
|
1:CLA305
|
3.1
|
63.4
|
1.0
|
C4B
|
1:CLA305
|
3.1
|
69.9
|
1.0
|
C1A
|
1:CLA305
|
3.2
|
66.4
|
1.0
|
CHB
|
1:CLA305
|
3.4
|
70.3
|
1.0
|
CHD
|
1:CLA305
|
3.5
|
68.5
|
1.0
|
CHC
|
1:CLA305
|
3.5
|
67.0
|
1.0
|
CHA
|
1:CLA305
|
3.5
|
66.6
|
1.0
|
C3D
|
1:CLA305
|
4.2
|
60.7
|
1.0
|
C2D
|
1:CLA305
|
4.3
|
56.5
|
1.0
|
C2B
|
1:CLA305
|
4.3
|
66.1
|
1.0
|
C2C
|
1:CLA305
|
4.4
|
59.6
|
1.0
|
C3C
|
1:CLA305
|
4.4
|
61.7
|
1.0
|
C3B
|
1:CLA305
|
4.4
|
65.0
|
1.0
|
CG
|
1:GLU145
|
4.4
|
68.5
|
1.0
|
C3A
|
1:CLA305
|
4.4
|
67.3
|
1.0
|
C2A
|
1:CLA305
|
4.5
|
65.7
|
1.0
|
CG2
|
1:ILE141
|
4.6
|
60.8
|
1.0
|
CB
|
1:GLU145
|
4.7
|
72.2
|
1.0
|
OE2
|
1:GLU145
|
4.7
|
73.3
|
1.0
|
CD
|
1:GLU145
|
4.8
|
72.8
|
1.0
|
CBD
|
1:CLA305
|
5.0
|
70.0
|
1.0
|
|
Magnesium binding site 6 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 6 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg306
b:73.2
occ:1.00
|
MG
|
1:CHL306
|
0.0
|
73.2
|
1.0
|
ND
|
1:CHL306
|
2.0
|
68.9
|
1.0
|
NB
|
1:CHL306
|
2.1
|
70.5
|
1.0
|
NC
|
1:CHL306
|
2.1
|
66.4
|
1.0
|
NA
|
1:CHL306
|
2.1
|
68.6
|
1.0
|
NE2
|
1:GLN116
|
2.8
|
67.0
|
1.0
|
C4D
|
1:CHL306
|
3.0
|
63.8
|
1.0
|
C1B
|
1:CHL306
|
3.1
|
67.8
|
1.0
|
C4A
|
1:CHL306
|
3.1
|
63.6
|
1.0
|
C1D
|
1:CHL306
|
3.1
|
66.1
|
1.0
|
C4C
|
1:CHL306
|
3.1
|
68.6
|
1.0
|
C4B
|
1:CHL306
|
3.1
|
64.4
|
1.0
|
C1C
|
1:CHL306
|
3.1
|
60.9
|
1.0
|
C1A
|
1:CHL306
|
3.2
|
69.4
|
1.0
|
CHB
|
1:CHL306
|
3.4
|
65.3
|
1.0
|
CHA
|
1:CHL306
|
3.5
|
65.7
|
1.0
|
CHD
|
1:CHL306
|
3.5
|
68.3
|
1.0
|
CHC
|
1:CHL306
|
3.5
|
59.0
|
1.0
|
CD
|
1:GLN116
|
3.7
|
64.8
|
1.0
|
C3D
|
1:CHL306
|
4.2
|
64.9
|
1.0
|
CG
|
1:GLN116
|
4.3
|
63.8
|
1.0
|
C2D
|
1:CHL306
|
4.3
|
65.2
|
1.0
|
C2B
|
1:CHL306
|
4.3
|
66.0
|
1.0
|
C3C
|
1:CHL306
|
4.3
|
64.2
|
1.0
|
C2C
|
1:CHL306
|
4.4
|
65.7
|
1.0
|
C3A
|
1:CHL306
|
4.4
|
68.1
|
1.0
|
C3B
|
1:CHL306
|
4.4
|
65.7
|
1.0
|
OE1
|
1:GLN116
|
4.4
|
69.7
|
1.0
|
C2A
|
1:CHL306
|
4.4
|
68.7
|
1.0
|
C40
|
1:LMG319
|
4.5
|
81.0
|
1.0
|
CB
|
1:GLN116
|
4.7
|
63.1
|
1.0
|
C42
|
1:LMG319
|
4.9
|
74.2
|
1.0
|
C38
|
1:LMG319
|
4.9
|
74.7
|
1.0
|
CMC
|
1:CLA305
|
4.9
|
63.0
|
1.0
|
CMA
|
1:CHL306
|
5.0
|
66.5
|
1.0
|
C39
|
1:LMG319
|
5.0
|
77.9
|
1.0
|
CBD
|
1:CHL306
|
5.0
|
66.1
|
1.0
|
|
Magnesium binding site 7 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 7 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg307
b:52.0
occ:1.00
|
MG
|
1:CLA307
|
0.0
|
52.0
|
1.0
|
ND
|
1:CLA307
|
2.0
|
66.1
|
1.0
|
NB
|
1:CLA307
|
2.1
|
66.1
|
1.0
|
NC
|
1:CLA307
|
2.1
|
60.1
|
1.0
|
NA
|
1:CLA307
|
2.2
|
61.7
|
1.0
|
C4D
|
1:CLA307
|
3.0
|
62.0
|
1.0
|
C1B
|
1:CLA307
|
3.1
|
66.1
|
1.0
|
C4A
|
1:CLA307
|
3.1
|
61.5
|
1.0
|
C1D
|
1:CLA307
|
3.1
|
60.1
|
1.0
|
C4C
|
1:CLA307
|
3.1
|
63.2
|
1.0
|
C1C
|
1:CLA307
|
3.1
|
58.8
|
1.0
|
C4B
|
1:CLA307
|
3.1
|
61.6
|
1.0
|
C1A
|
1:CLA307
|
3.2
|
57.6
|
1.0
|
CHB
|
1:CLA307
|
3.4
|
67.0
|
1.0
|
CHD
|
1:CLA307
|
3.5
|
58.0
|
1.0
|
CHC
|
1:CLA307
|
3.5
|
59.8
|
1.0
|
CHA
|
1:CLA307
|
3.5
|
61.4
|
1.0
|
CZ
|
1:PHE172
|
3.6
|
64.8
|
1.0
|
CE1
|
1:PHE172
|
3.9
|
66.3
|
1.0
|
C3D
|
1:CLA307
|
4.2
|
54.6
|
1.0
|
C2D
|
1:CLA307
|
4.3
|
53.2
|
1.0
|
C2B
|
1:CLA307
|
4.3
|
56.4
|
1.0
|
C2C
|
1:CLA307
|
4.4
|
59.1
|
1.0
|
C3C
|
1:CLA307
|
4.4
|
60.8
|
1.0
|
C3B
|
1:CLA307
|
4.4
|
58.2
|
1.0
|
C3A
|
1:CLA307
|
4.4
|
51.4
|
1.0
|
C2A
|
1:CLA307
|
4.5
|
50.8
|
1.0
|
CB
|
1:ARG156
|
4.6
|
63.9
|
1.0
|
O
|
1:VAL152
|
4.6
|
66.8
|
1.0
|
CE2
|
1:PHE172
|
4.7
|
65.9
|
1.0
|
CBD
|
1:CLA307
|
5.0
|
54.8
|
1.0
|
|
Magnesium binding site 8 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 8 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg308
b:61.5
occ:1.00
|
MG
|
1:CLA308
|
0.0
|
61.5
|
1.0
|
ND
|
1:CLA308
|
2.0
|
49.0
|
1.0
|
NB
|
1:CLA308
|
2.1
|
61.1
|
1.0
|
NC
|
1:CLA308
|
2.1
|
62.4
|
1.0
|
NA
|
1:CLA308
|
2.2
|
60.6
|
1.0
|
OE1
|
1:GLU153
|
2.7
|
66.0
|
1.0
|
C4D
|
1:CLA308
|
3.0
|
54.9
|
1.0
|
C1B
|
1:CLA308
|
3.0
|
61.8
|
1.0
|
C4A
|
1:CLA308
|
3.1
|
58.3
|
1.0
|
C1D
|
1:CLA308
|
3.1
|
51.0
|
1.0
|
C4C
|
1:CLA308
|
3.1
|
64.3
|
1.0
|
C1C
|
1:CLA308
|
3.1
|
56.8
|
1.0
|
C4B
|
1:CLA308
|
3.1
|
56.3
|
1.0
|
C1A
|
1:CLA308
|
3.2
|
56.3
|
1.0
|
CD
|
1:GLU153
|
3.3
|
64.0
|
1.0
|
CHB
|
1:CLA308
|
3.3
|
59.8
|
1.0
|
CHD
|
1:CLA308
|
3.4
|
58.4
|
1.0
|
CHC
|
1:CLA308
|
3.5
|
51.7
|
1.0
|
CHA
|
1:CLA308
|
3.5
|
55.7
|
1.0
|
CG
|
1:GLU153
|
3.6
|
56.3
|
1.0
|
OE2
|
1:GLU153
|
4.1
|
67.7
|
1.0
|
NH2
|
1:ARG156
|
4.2
|
58.5
|
1.0
|
C3D
|
1:CLA308
|
4.2
|
59.0
|
1.0
|
C2D
|
1:CLA308
|
4.3
|
56.8
|
1.0
|
C2B
|
1:CLA308
|
4.3
|
59.4
|
1.0
|
C3A
|
1:CLA308
|
4.3
|
51.5
|
1.0
|
C2C
|
1:CLA308
|
4.4
|
60.6
|
1.0
|
C3C
|
1:CLA308
|
4.4
|
58.9
|
1.0
|
CB
|
1:GLU153
|
4.4
|
47.1
|
1.0
|
C3B
|
1:CLA308
|
4.4
|
59.4
|
1.0
|
C2A
|
1:CLA308
|
4.4
|
52.3
|
1.0
|
CMD
|
1:CLA303
|
4.8
|
51.8
|
1.0
|
CMA
|
1:CLA308
|
4.9
|
51.5
|
1.0
|
C19
|
1:LHG322
|
4.9
|
71.8
|
1.0
|
C18
|
1:LHG322
|
4.9
|
77.8
|
1.0
|
C17
|
1:LHG322
|
5.0
|
80.3
|
1.0
|
CBD
|
1:CLA308
|
5.0
|
48.4
|
1.0
|
|
Magnesium binding site 9 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 9 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg309
b:49.3
occ:1.00
|
MG
|
1:CLA309
|
0.0
|
49.3
|
1.0
|
ND
|
1:CLA309
|
2.0
|
59.4
|
1.0
|
NB
|
1:CLA309
|
2.1
|
52.8
|
1.0
|
NC
|
1:CLA309
|
2.1
|
58.2
|
1.0
|
NA
|
1:CLA309
|
2.2
|
57.1
|
1.0
|
OE2
|
1:GLU191
|
2.7
|
40.3
|
1.0
|
C4D
|
1:CLA309
|
3.0
|
54.7
|
1.0
|
C1B
|
1:CLA309
|
3.1
|
50.9
|
1.0
|
C4A
|
1:CLA309
|
3.1
|
55.8
|
1.0
|
C1D
|
1:CLA309
|
3.1
|
54.0
|
1.0
|
C4C
|
1:CLA309
|
3.1
|
54.8
|
1.0
|
C1C
|
1:CLA309
|
3.1
|
54.1
|
1.0
|
C4B
|
1:CLA309
|
3.1
|
55.3
|
1.0
|
C1A
|
1:CLA309
|
3.2
|
54.6
|
1.0
|
CHB
|
1:CLA309
|
3.4
|
51.4
|
1.0
|
CHD
|
1:CLA309
|
3.4
|
51.8
|
1.0
|
CHC
|
1:CLA309
|
3.5
|
49.7
|
1.0
|
CHA
|
1:CLA309
|
3.5
|
51.6
|
1.0
|
CD
|
1:GLU191
|
3.7
|
46.3
|
1.0
|
C3D
|
1:CLA309
|
4.2
|
53.1
|
1.0
|
C2D
|
1:CLA309
|
4.3
|
51.9
|
1.0
|
NE
|
1:ARG92
|
4.3
|
47.9
|
1.0
|
C2B
|
1:CLA309
|
4.3
|
53.7
|
1.0
|
CG
|
1:GLU191
|
4.3
|
42.1
|
1.0
|
C2C
|
1:CLA309
|
4.4
|
51.6
|
1.0
|
C3C
|
1:CLA309
|
4.4
|
52.7
|
1.0
|
C3B
|
1:CLA309
|
4.4
|
54.8
|
1.0
|
C3A
|
1:CLA309
|
4.4
|
52.4
|
1.0
|
C38
|
1:LUT315
|
4.4
|
57.1
|
1.0
|
C2A
|
1:CLA309
|
4.5
|
52.0
|
1.0
|
NH2
|
1:ARG92
|
4.6
|
45.4
|
1.0
|
OE1
|
1:GLU191
|
4.6
|
50.2
|
1.0
|
O2A
|
1:CLA309
|
4.8
|
64.2
|
1.0
|
CB
|
1:GLU191
|
4.9
|
40.8
|
1.0
|
CZ
|
1:ARG92
|
4.9
|
40.6
|
1.0
|
CBD
|
1:CLA309
|
5.0
|
52.0
|
1.0
|
|
Magnesium binding site 10 out
of 155 in 9gbi
Go back to
Magnesium Binding Sites List in 9gbi
Magnesium binding site 10 out
of 155 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg310
b:57.0
occ:1.00
|
MG
|
1:CLA310
|
0.0
|
57.0
|
1.0
|
ND
|
1:CLA310
|
2.0
|
56.0
|
1.0
|
NB
|
1:CLA310
|
2.1
|
54.2
|
1.0
|
NC
|
1:CLA310
|
2.1
|
55.4
|
1.0
|
NA
|
1:CLA310
|
2.2
|
59.1
|
1.0
|
O4
|
1:LHG317
|
2.7
|
54.6
|
1.0
|
C4D
|
1:CLA310
|
3.0
|
52.8
|
1.0
|
C1B
|
1:CLA310
|
3.1
|
58.7
|
1.0
|
C4A
|
1:CLA310
|
3.1
|
52.0
|
1.0
|
C1D
|
1:CLA310
|
3.1
|
51.4
|
1.0
|
C4C
|
1:CLA310
|
3.1
|
53.0
|
1.0
|
C1C
|
1:CLA310
|
3.1
|
51.8
|
1.0
|
C4B
|
1:CLA310
|
3.1
|
49.6
|
1.0
|
C1A
|
1:CLA310
|
3.2
|
53.5
|
1.0
|
CHB
|
1:CLA310
|
3.4
|
54.7
|
1.0
|
CHD
|
1:CLA310
|
3.5
|
52.0
|
1.0
|
CHC
|
1:CLA310
|
3.5
|
54.4
|
1.0
|
CHA
|
1:CLA310
|
3.5
|
51.8
|
1.0
|
P
|
1:LHG317
|
3.7
|
63.3
|
1.0
|
O3
|
1:LHG317
|
3.8
|
56.9
|
1.0
|
C4
|
1:LHG317
|
4.1
|
53.7
|
1.0
|
O6
|
1:LHG317
|
4.1
|
47.3
|
1.0
|
C3D
|
1:CLA310
|
4.2
|
49.5
|
1.0
|
C2D
|
1:CLA310
|
4.3
|
45.5
|
1.0
|
C2B
|
1:CLA310
|
4.3
|
58.4
|
1.0
|
C2C
|
1:CLA310
|
4.4
|
43.8
|
1.0
|
C3C
|
1:CLA310
|
4.4
|
45.6
|
1.0
|
C3B
|
1:CLA310
|
4.4
|
52.7
|
1.0
|
C3A
|
1:CLA310
|
4.4
|
45.3
|
1.0
|
C2A
|
1:CLA310
|
4.5
|
50.8
|
1.0
|
C6
|
1:LHG317
|
4.8
|
51.9
|
1.0
|
CMD
|
1:CLA311
|
4.9
|
48.1
|
1.0
|
C5
|
1:LHG317
|
5.0
|
57.5
|
1.0
|
NZ
|
1:LYS193
|
5.0
|
39.6
|
1.0
|
CBD
|
1:CLA310
|
5.0
|
45.7
|
1.0
|
|
Reference:
S.Capaldi,
Z.Guardini,
D.Montepietra,
V.F.Pagliuca,
A.Amelii,
D.M.V.Bonnet,
A.Chaves-Sanjuan,
L.Dall'osto,
R.Bassi.
Structural Determinants For Red-Shifted Absorption in Higher-Plants Photosystem I To Be Published.
Page generated: Sat Aug 23 05:40:31 2025
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