Magnesium in PDB 9gc2: Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
Enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
All present enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant:
1.97.1.12;
Other elements in 9gc2:
The structure of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
154;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
(pdb code 9gc2). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 154 binding sites of Magnesium where determined in the
Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant, PDB code: 9gc2:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 1 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg301
b:80.8
occ:1.00
|
MG
|
1:CHL301
|
0.0
|
80.8
|
1.0
|
ND
|
1:CHL301
|
2.0
|
73.4
|
1.0
|
NB
|
1:CHL301
|
2.1
|
63.5
|
1.0
|
NC
|
1:CHL301
|
2.1
|
68.1
|
1.0
|
NA
|
1:CHL301
|
2.1
|
64.5
|
1.0
|
O
|
1:TRP48
|
2.5
|
68.6
|
1.0
|
C4D
|
1:CHL301
|
3.0
|
58.3
|
1.0
|
C1B
|
1:CHL301
|
3.1
|
58.4
|
1.0
|
C4A
|
1:CHL301
|
3.1
|
62.0
|
1.0
|
C4C
|
1:CHL301
|
3.1
|
69.3
|
1.0
|
C1D
|
1:CHL301
|
3.1
|
67.6
|
1.0
|
C4B
|
1:CHL301
|
3.1
|
64.2
|
1.0
|
C1C
|
1:CHL301
|
3.1
|
65.2
|
1.0
|
C1A
|
1:CHL301
|
3.2
|
50.5
|
1.0
|
CHB
|
1:CHL301
|
3.4
|
56.7
|
1.0
|
CHA
|
1:CHL301
|
3.4
|
46.3
|
1.0
|
CHD
|
1:CHL301
|
3.5
|
64.5
|
1.0
|
CHC
|
1:CHL301
|
3.5
|
62.7
|
1.0
|
C
|
1:TRP48
|
3.6
|
63.6
|
1.0
|
C26
|
1:LHG317
|
3.9
|
76.9
|
1.0
|
CA
|
1:TRP48
|
4.1
|
58.3
|
1.0
|
C3D
|
1:CHL301
|
4.2
|
62.1
|
1.0
|
C2B
|
1:CHL301
|
4.3
|
64.5
|
1.0
|
C2D
|
1:CHL301
|
4.3
|
63.8
|
1.0
|
C3C
|
1:CHL301
|
4.3
|
67.5
|
1.0
|
C2C
|
1:CHL301
|
4.4
|
68.3
|
1.0
|
C3B
|
1:CHL301
|
4.4
|
62.8
|
1.0
|
C3A
|
1:CHL301
|
4.4
|
64.4
|
1.0
|
C2A
|
1:CHL301
|
4.4
|
59.4
|
1.0
|
C25
|
1:LHG317
|
4.4
|
76.8
|
1.0
|
CB
|
1:TRP48
|
4.4
|
54.3
|
1.0
|
N
|
1:MET49
|
4.6
|
71.2
|
1.0
|
C24
|
1:LHG317
|
4.7
|
79.0
|
1.0
|
C27
|
1:LHG317
|
4.7
|
76.1
|
1.0
|
CE3
|
1:TRP48
|
4.9
|
58.2
|
1.0
|
CBD
|
1:CHL301
|
4.9
|
64.0
|
1.0
|
CA
|
1:MET49
|
5.0
|
68.5
|
1.0
|
C28
|
1:LHG317
|
5.0
|
73.0
|
1.0
|
|
Magnesium binding site 2 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 2 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg302
b:65.1
occ:1.00
|
MG
|
1:CLA302
|
0.0
|
65.1
|
1.0
|
ND
|
1:CLA302
|
2.0
|
68.2
|
1.0
|
NB
|
1:CLA302
|
2.1
|
56.8
|
1.0
|
NC
|
1:CLA302
|
2.1
|
60.4
|
1.0
|
NA
|
1:CLA302
|
2.2
|
53.1
|
1.0
|
OE2
|
1:GLU87
|
2.7
|
67.2
|
1.0
|
C4D
|
1:CLA302
|
3.0
|
58.9
|
1.0
|
C1B
|
1:CLA302
|
3.1
|
56.8
|
1.0
|
C4A
|
1:CLA302
|
3.1
|
61.5
|
1.0
|
C1D
|
1:CLA302
|
3.1
|
55.2
|
1.0
|
C4C
|
1:CLA302
|
3.1
|
51.7
|
1.0
|
C1C
|
1:CLA302
|
3.1
|
62.3
|
1.0
|
C4B
|
1:CLA302
|
3.1
|
52.1
|
1.0
|
C1A
|
1:CLA302
|
3.2
|
56.6
|
1.0
|
CD
|
1:GLU87
|
3.4
|
64.5
|
1.0
|
CHB
|
1:CLA302
|
3.4
|
65.9
|
1.0
|
CHD
|
1:CLA302
|
3.5
|
52.2
|
1.0
|
CHC
|
1:CLA302
|
3.5
|
52.9
|
1.0
|
CHA
|
1:CLA302
|
3.5
|
60.2
|
1.0
|
CG
|
1:GLU87
|
3.9
|
45.9
|
1.0
|
C38
|
1:XAT316
|
4.1
|
62.3
|
1.0
|
NH2
|
1:ARG196
|
4.1
|
49.3
|
1.0
|
OE1
|
1:GLU87
|
4.1
|
72.3
|
1.0
|
NE
|
1:ARG196
|
4.2
|
38.4
|
1.0
|
C3D
|
1:CLA302
|
4.2
|
42.2
|
1.0
|
C2D
|
1:CLA302
|
4.3
|
43.0
|
1.0
|
C2B
|
1:CLA302
|
4.3
|
46.9
|
1.0
|
C2C
|
1:CLA302
|
4.4
|
59.4
|
1.0
|
C3C
|
1:CLA302
|
4.4
|
45.3
|
1.0
|
C3B
|
1:CLA302
|
4.4
|
44.7
|
1.0
|
C3A
|
1:CLA302
|
4.4
|
52.5
|
1.0
|
CZ
|
1:ARG196
|
4.5
|
46.2
|
1.0
|
C2A
|
1:CLA302
|
4.5
|
48.6
|
1.0
|
CB
|
1:GLU87
|
4.6
|
47.1
|
1.0
|
CBD
|
1:CLA302
|
5.0
|
55.1
|
1.0
|
|
Magnesium binding site 3 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 3 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg303
b:60.8
occ:1.00
|
MG
|
1:CLA303
|
0.0
|
60.8
|
1.0
|
ND
|
1:CLA303
|
2.0
|
74.0
|
1.0
|
NB
|
1:CLA303
|
2.1
|
76.9
|
1.0
|
NC
|
1:CLA303
|
2.1
|
62.8
|
1.0
|
NA
|
1:CLA303
|
2.2
|
60.6
|
1.0
|
NE2
|
1:HIS90
|
2.7
|
56.3
|
1.0
|
C4D
|
1:CLA303
|
3.0
|
65.4
|
1.0
|
C1B
|
1:CLA303
|
3.1
|
69.4
|
1.0
|
C4A
|
1:CLA303
|
3.1
|
63.5
|
1.0
|
C1D
|
1:CLA303
|
3.1
|
68.2
|
1.0
|
C4C
|
1:CLA303
|
3.1
|
63.0
|
1.0
|
C1C
|
1:CLA303
|
3.1
|
68.8
|
1.0
|
C4B
|
1:CLA303
|
3.1
|
72.2
|
1.0
|
C1A
|
1:CLA303
|
3.2
|
60.7
|
1.0
|
CHB
|
1:CLA303
|
3.4
|
61.6
|
1.0
|
CHD
|
1:CLA303
|
3.5
|
66.8
|
1.0
|
CHC
|
1:CLA303
|
3.5
|
65.7
|
1.0
|
CHA
|
1:CLA303
|
3.5
|
62.0
|
1.0
|
CD2
|
1:HIS90
|
3.5
|
56.1
|
1.0
|
CE1
|
1:HIS90
|
3.7
|
56.5
|
1.0
|
C3D
|
1:CLA303
|
4.2
|
56.8
|
1.0
|
C2D
|
1:CLA303
|
4.3
|
56.5
|
1.0
|
C2B
|
1:CLA303
|
4.3
|
66.2
|
1.0
|
C2C
|
1:CLA303
|
4.4
|
70.9
|
1.0
|
C3C
|
1:CLA303
|
4.4
|
59.7
|
1.0
|
C3B
|
1:CLA303
|
4.4
|
68.4
|
1.0
|
C3A
|
1:CLA303
|
4.4
|
68.4
|
1.0
|
C2A
|
1:CLA303
|
4.5
|
61.6
|
1.0
|
C11
|
1:CLA308
|
4.5
|
81.8
|
1.0
|
C12
|
1:CLA308
|
4.6
|
83.4
|
1.0
|
CG
|
1:HIS90
|
4.7
|
53.6
|
1.0
|
ND1
|
1:HIS90
|
4.8
|
53.7
|
1.0
|
CBD
|
1:CLA303
|
5.0
|
67.2
|
1.0
|
C10
|
1:CLA308
|
5.0
|
75.7
|
1.0
|
|
Magnesium binding site 4 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 4 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg304
b:106.5
occ:1.00
|
MG
|
1:CLA304
|
0.0
|
106.5
|
1.0
|
ND
|
1:CLA304
|
2.0
|
104.8
|
1.0
|
NB
|
1:CLA304
|
2.1
|
102.3
|
1.0
|
NC
|
1:CLA304
|
2.1
|
98.1
|
1.0
|
NA
|
1:CLA304
|
2.2
|
101.4
|
1.0
|
C4D
|
1:CLA304
|
3.0
|
98.0
|
1.0
|
C1B
|
1:CLA304
|
3.1
|
103.5
|
1.0
|
C4A
|
1:CLA304
|
3.1
|
103.7
|
1.0
|
C1D
|
1:CLA304
|
3.1
|
104.0
|
1.0
|
C4C
|
1:CLA304
|
3.1
|
98.5
|
1.0
|
C1C
|
1:CLA304
|
3.1
|
98.9
|
1.0
|
C4B
|
1:CLA304
|
3.1
|
100.4
|
1.0
|
C1A
|
1:CLA304
|
3.2
|
98.7
|
1.0
|
CHB
|
1:CLA304
|
3.4
|
106.0
|
1.0
|
CHD
|
1:CLA304
|
3.5
|
101.7
|
1.0
|
CHC
|
1:CLA304
|
3.5
|
101.8
|
1.0
|
CHA
|
1:CLA304
|
3.5
|
94.7
|
1.0
|
C27
|
G:BCR201
|
3.9
|
115.7
|
1.0
|
C28
|
G:BCR201
|
3.9
|
113.7
|
1.0
|
O
|
1:GLY100
|
4.1
|
87.8
|
1.0
|
C3D
|
1:CLA304
|
4.2
|
100.3
|
1.0
|
C2D
|
1:CLA304
|
4.3
|
104.1
|
1.0
|
C2B
|
1:CLA304
|
4.3
|
100.8
|
1.0
|
C2C
|
1:CLA304
|
4.4
|
100.7
|
1.0
|
C3C
|
1:CLA304
|
4.4
|
99.6
|
1.0
|
C3B
|
1:CLA304
|
4.4
|
96.7
|
1.0
|
C3A
|
1:CLA304
|
4.4
|
98.4
|
1.0
|
C2A
|
1:CLA304
|
4.5
|
99.8
|
1.0
|
CA
|
1:GLY100
|
4.6
|
94.4
|
1.0
|
C4
|
1:XAT316
|
4.7
|
68.7
|
1.0
|
C
|
1:GLY100
|
4.8
|
88.9
|
1.0
|
CG
|
1:PRO104
|
4.9
|
94.8
|
1.0
|
C26
|
G:BCR201
|
5.0
|
113.7
|
1.0
|
CBD
|
1:CLA304
|
5.0
|
97.1
|
1.0
|
|
Magnesium binding site 5 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 5 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg305
b:110.7
occ:1.00
|
MG
|
1:CLA305
|
0.0
|
110.7
|
1.0
|
ND
|
1:CLA305
|
2.0
|
113.0
|
1.0
|
NB
|
1:CLA305
|
2.1
|
115.4
|
1.0
|
NC
|
1:CLA305
|
2.1
|
115.0
|
1.0
|
NA
|
1:CLA305
|
2.2
|
111.4
|
1.0
|
C4D
|
1:CLA305
|
3.0
|
112.4
|
1.0
|
C1B
|
1:CLA305
|
3.1
|
113.8
|
1.0
|
C4A
|
1:CLA305
|
3.1
|
112.4
|
1.0
|
C1D
|
1:CLA305
|
3.1
|
112.1
|
1.0
|
C1C
|
1:CLA305
|
3.1
|
110.2
|
1.0
|
C4C
|
1:CLA305
|
3.1
|
113.1
|
1.0
|
C4B
|
1:CLA305
|
3.1
|
112.2
|
1.0
|
C1A
|
1:CLA305
|
3.2
|
114.5
|
1.0
|
CHB
|
1:CLA305
|
3.4
|
112.0
|
1.0
|
CHD
|
1:CLA305
|
3.5
|
113.3
|
1.0
|
CHC
|
1:CLA305
|
3.5
|
108.3
|
1.0
|
CHA
|
1:CLA305
|
3.5
|
113.8
|
1.0
|
C3D
|
1:CLA305
|
4.2
|
110.4
|
1.0
|
C2D
|
1:CLA305
|
4.3
|
108.0
|
1.0
|
C2B
|
1:CLA305
|
4.3
|
111.3
|
1.0
|
C2C
|
1:CLA305
|
4.4
|
111.2
|
1.0
|
C3C
|
1:CLA305
|
4.4
|
108.2
|
1.0
|
C3B
|
1:CLA305
|
4.4
|
112.2
|
1.0
|
C3A
|
1:CLA305
|
4.4
|
111.7
|
1.0
|
C2A
|
1:CLA305
|
4.5
|
112.4
|
1.0
|
CG
|
1:GLU145
|
4.5
|
106.4
|
1.0
|
CG2
|
1:ILE141
|
4.6
|
112.6
|
1.0
|
CB
|
1:GLU145
|
4.7
|
108.2
|
1.0
|
CBD
|
1:CLA305
|
5.0
|
113.4
|
1.0
|
|
Magnesium binding site 6 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 6 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg306
b:121.7
occ:1.00
|
MG
|
1:CHL306
|
0.0
|
121.7
|
1.0
|
ND
|
1:CHL306
|
2.0
|
122.4
|
1.0
|
NB
|
1:CHL306
|
2.1
|
119.5
|
1.0
|
NC
|
1:CHL306
|
2.1
|
125.4
|
1.0
|
NA
|
1:CHL306
|
2.1
|
122.5
|
1.0
|
NE2
|
1:GLN116
|
2.7
|
121.1
|
1.0
|
CD
|
1:GLN116
|
2.9
|
118.8
|
1.0
|
OE1
|
1:GLN116
|
2.9
|
113.6
|
1.0
|
C4D
|
1:CHL306
|
3.0
|
122.3
|
1.0
|
C1B
|
1:CHL306
|
3.1
|
122.5
|
1.0
|
C4A
|
1:CHL306
|
3.1
|
121.9
|
1.0
|
C1D
|
1:CHL306
|
3.1
|
118.7
|
1.0
|
C4C
|
1:CHL306
|
3.1
|
122.3
|
1.0
|
C4B
|
1:CHL306
|
3.1
|
119.3
|
1.0
|
C1C
|
1:CHL306
|
3.1
|
123.3
|
1.0
|
C1A
|
1:CHL306
|
3.2
|
123.1
|
1.0
|
CHB
|
1:CHL306
|
3.4
|
124.3
|
1.0
|
CHA
|
1:CHL306
|
3.5
|
124.1
|
1.0
|
CHD
|
1:CHL306
|
3.5
|
118.7
|
1.0
|
CHC
|
1:CHL306
|
3.5
|
119.6
|
1.0
|
CG
|
1:GLN116
|
4.0
|
119.7
|
1.0
|
C3D
|
1:CHL306
|
4.2
|
119.8
|
1.0
|
C3A
|
1:CHL306
|
4.3
|
121.0
|
1.0
|
C2D
|
1:CHL306
|
4.3
|
116.8
|
1.0
|
C2B
|
1:CHL306
|
4.3
|
122.4
|
1.0
|
C3C
|
1:CHL306
|
4.3
|
118.6
|
1.0
|
C3B
|
1:CHL306
|
4.4
|
122.8
|
1.0
|
C2C
|
1:CHL306
|
4.4
|
121.2
|
1.0
|
C2A
|
1:CHL306
|
4.4
|
122.3
|
1.0
|
CMA
|
1:CHL306
|
4.8
|
118.3
|
1.0
|
CBD
|
1:CHL306
|
5.0
|
123.9
|
1.0
|
CMC
|
1:CLA305
|
5.0
|
117.2
|
1.0
|
|
Magnesium binding site 7 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 7 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg307
b:71.3
occ:1.00
|
MG
|
1:CLA307
|
0.0
|
71.3
|
1.0
|
ND
|
1:CLA307
|
2.0
|
83.3
|
1.0
|
NB
|
1:CLA307
|
2.1
|
76.2
|
1.0
|
NC
|
1:CLA307
|
2.1
|
65.5
|
1.0
|
NA
|
1:CLA307
|
2.2
|
66.9
|
1.0
|
C4D
|
1:CLA307
|
3.0
|
72.9
|
1.0
|
C1B
|
1:CLA307
|
3.1
|
71.8
|
1.0
|
C4A
|
1:CLA307
|
3.1
|
68.2
|
1.0
|
C1D
|
1:CLA307
|
3.1
|
76.1
|
1.0
|
C4C
|
1:CLA307
|
3.1
|
68.7
|
1.0
|
C1C
|
1:CLA307
|
3.1
|
65.5
|
1.0
|
C4B
|
1:CLA307
|
3.1
|
75.2
|
1.0
|
C1A
|
1:CLA307
|
3.2
|
69.0
|
1.0
|
CHB
|
1:CLA307
|
3.4
|
74.8
|
1.0
|
CHD
|
1:CLA307
|
3.5
|
69.0
|
1.0
|
CHC
|
1:CLA307
|
3.5
|
73.2
|
1.0
|
CHA
|
1:CLA307
|
3.5
|
71.2
|
1.0
|
CZ
|
1:PHE172
|
3.7
|
85.6
|
1.0
|
CE1
|
1:PHE172
|
4.0
|
83.8
|
1.0
|
CG1
|
1:VAL152
|
4.2
|
95.8
|
1.0
|
C3D
|
1:CLA307
|
4.2
|
55.6
|
1.0
|
C2D
|
1:CLA307
|
4.3
|
61.2
|
1.0
|
C2B
|
1:CLA307
|
4.3
|
65.0
|
1.0
|
C2C
|
1:CLA307
|
4.4
|
68.3
|
1.0
|
C3C
|
1:CLA307
|
4.4
|
67.1
|
1.0
|
C3B
|
1:CLA307
|
4.4
|
69.1
|
1.0
|
C3A
|
1:CLA307
|
4.4
|
61.8
|
1.0
|
C2A
|
1:CLA307
|
4.5
|
62.0
|
1.0
|
CB
|
1:ARG156
|
4.5
|
81.0
|
1.0
|
O
|
1:VAL152
|
4.6
|
95.5
|
1.0
|
CE2
|
1:PHE172
|
4.8
|
87.8
|
1.0
|
CBD
|
1:CLA307
|
5.0
|
67.7
|
1.0
|
|
Magnesium binding site 8 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 8 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg308
b:95.3
occ:1.00
|
MG
|
1:CLA308
|
0.0
|
95.3
|
1.0
|
ND
|
1:CLA308
|
2.0
|
89.5
|
1.0
|
NB
|
1:CLA308
|
2.1
|
87.2
|
1.0
|
NC
|
1:CLA308
|
2.1
|
85.0
|
1.0
|
NA
|
1:CLA308
|
2.2
|
82.5
|
1.0
|
OE1
|
1:GLU153
|
2.7
|
77.2
|
1.0
|
C4D
|
1:CLA308
|
3.0
|
83.0
|
1.0
|
C1B
|
1:CLA308
|
3.0
|
85.7
|
1.0
|
C4A
|
1:CLA308
|
3.1
|
74.2
|
1.0
|
C1D
|
1:CLA308
|
3.1
|
81.5
|
1.0
|
C4C
|
1:CLA308
|
3.1
|
83.1
|
1.0
|
C1C
|
1:CLA308
|
3.1
|
84.1
|
1.0
|
C4B
|
1:CLA308
|
3.1
|
78.9
|
1.0
|
C1A
|
1:CLA308
|
3.2
|
82.8
|
1.0
|
CD
|
1:GLU153
|
3.3
|
84.0
|
1.0
|
CHB
|
1:CLA308
|
3.3
|
78.5
|
1.0
|
CHD
|
1:CLA308
|
3.4
|
80.4
|
1.0
|
CHA
|
1:CLA308
|
3.5
|
81.2
|
1.0
|
CHC
|
1:CLA308
|
3.5
|
77.3
|
1.0
|
CG
|
1:GLU153
|
3.7
|
90.5
|
1.0
|
OE2
|
1:GLU153
|
4.1
|
88.8
|
1.0
|
C3D
|
1:CLA308
|
4.2
|
75.9
|
1.0
|
C2D
|
1:CLA308
|
4.3
|
77.1
|
1.0
|
C2B
|
1:CLA308
|
4.3
|
84.6
|
1.0
|
C2C
|
1:CLA308
|
4.4
|
88.6
|
1.0
|
C3C
|
1:CLA308
|
4.4
|
85.6
|
1.0
|
NH2
|
1:ARG156
|
4.4
|
76.3
|
1.0
|
C3B
|
1:CLA308
|
4.4
|
80.3
|
1.0
|
C3A
|
1:CLA308
|
4.4
|
81.5
|
1.0
|
CB
|
1:GLU153
|
4.4
|
88.8
|
1.0
|
C2A
|
1:CLA308
|
4.5
|
82.7
|
1.0
|
CMD
|
1:CLA303
|
4.6
|
68.1
|
1.0
|
C20
|
1:LHG320
|
4.7
|
104.5
|
1.0
|
C21
|
1:LHG320
|
4.8
|
103.9
|
1.0
|
CBD
|
1:CLA308
|
5.0
|
80.0
|
1.0
|
|
Magnesium binding site 9 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 9 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg309
b:79.4
occ:1.00
|
MG
|
1:CLA309
|
0.0
|
79.4
|
1.0
|
ND
|
1:CLA309
|
2.0
|
76.8
|
1.0
|
NB
|
1:CLA309
|
2.1
|
74.8
|
1.0
|
NC
|
1:CLA309
|
2.1
|
69.9
|
1.0
|
NA
|
1:CLA309
|
2.2
|
73.0
|
1.0
|
OE2
|
1:GLU191
|
2.6
|
69.8
|
1.0
|
C4D
|
1:CLA309
|
3.0
|
68.2
|
1.0
|
C1B
|
1:CLA309
|
3.1
|
75.6
|
1.0
|
C4A
|
1:CLA309
|
3.1
|
72.4
|
1.0
|
C1D
|
1:CLA309
|
3.1
|
73.8
|
1.0
|
C4C
|
1:CLA309
|
3.1
|
74.2
|
1.0
|
C1C
|
1:CLA309
|
3.1
|
67.5
|
1.0
|
C4B
|
1:CLA309
|
3.1
|
74.2
|
1.0
|
C1A
|
1:CLA309
|
3.2
|
73.7
|
1.0
|
CHB
|
1:CLA309
|
3.4
|
77.7
|
1.0
|
CHD
|
1:CLA309
|
3.4
|
72.5
|
1.0
|
CHC
|
1:CLA309
|
3.5
|
75.5
|
1.0
|
CHA
|
1:CLA309
|
3.5
|
70.7
|
1.0
|
NH1
|
1:ARG92
|
3.6
|
59.8
|
1.0
|
CD
|
1:GLU191
|
3.7
|
71.0
|
1.0
|
C38
|
1:LUT315
|
4.2
|
81.8
|
1.0
|
C3D
|
1:CLA309
|
4.2
|
67.5
|
1.0
|
C2D
|
1:CLA309
|
4.3
|
69.6
|
1.0
|
C2B
|
1:CLA309
|
4.3
|
70.2
|
1.0
|
C3A
|
1:CLA309
|
4.3
|
67.3
|
1.0
|
C2C
|
1:CLA309
|
4.4
|
70.8
|
1.0
|
C3C
|
1:CLA309
|
4.4
|
73.3
|
1.0
|
C3B
|
1:CLA309
|
4.4
|
72.0
|
1.0
|
CG
|
1:GLU191
|
4.4
|
67.3
|
1.0
|
C2A
|
1:CLA309
|
4.5
|
73.3
|
1.0
|
OE1
|
1:GLU191
|
4.6
|
71.8
|
1.0
|
CMA
|
1:CLA309
|
4.8
|
71.2
|
1.0
|
CZ
|
1:ARG92
|
4.8
|
49.8
|
1.0
|
O2A
|
1:CLA309
|
4.9
|
85.8
|
1.0
|
CBD
|
1:CLA309
|
5.0
|
71.7
|
1.0
|
|
Magnesium binding site 10 out
of 154 in 9gc2
Go back to
Magnesium Binding Sites List in 9gc2
Magnesium binding site 10 out
of 154 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg310
b:90.4
occ:1.00
|
MG
|
1:CLA310
|
0.0
|
90.4
|
1.0
|
ND
|
1:CLA310
|
2.0
|
75.2
|
1.0
|
NB
|
1:CLA310
|
2.1
|
73.2
|
1.0
|
NC
|
1:CLA310
|
2.1
|
85.2
|
1.0
|
NA
|
1:CLA310
|
2.2
|
85.8
|
1.0
|
O4
|
1:LHG317
|
2.7
|
81.7
|
1.0
|
C4D
|
1:CLA310
|
3.0
|
74.0
|
1.0
|
C1B
|
1:CLA310
|
3.0
|
77.3
|
1.0
|
C4A
|
1:CLA310
|
3.1
|
83.8
|
1.0
|
C1D
|
1:CLA310
|
3.1
|
73.3
|
1.0
|
C4C
|
1:CLA310
|
3.1
|
81.7
|
1.0
|
C1C
|
1:CLA310
|
3.1
|
78.5
|
1.0
|
C4B
|
1:CLA310
|
3.1
|
72.7
|
1.0
|
C1A
|
1:CLA310
|
3.2
|
76.0
|
1.0
|
CHB
|
1:CLA310
|
3.4
|
79.9
|
1.0
|
O3
|
1:LHG317
|
3.4
|
85.3
|
1.0
|
CHD
|
1:CLA310
|
3.4
|
77.1
|
1.0
|
CHA
|
1:CLA310
|
3.5
|
78.7
|
1.0
|
CHC
|
1:CLA310
|
3.5
|
77.3
|
1.0
|
P
|
1:LHG317
|
3.5
|
89.2
|
1.0
|
C4
|
1:LHG317
|
4.0
|
87.7
|
1.0
|
O6
|
1:LHG317
|
4.0
|
74.8
|
1.0
|
C3D
|
1:CLA310
|
4.2
|
76.0
|
1.0
|
C2D
|
1:CLA310
|
4.3
|
72.5
|
1.0
|
C2B
|
1:CLA310
|
4.3
|
78.7
|
1.0
|
C2C
|
1:CLA310
|
4.4
|
79.6
|
1.0
|
C3C
|
1:CLA310
|
4.4
|
75.7
|
1.0
|
C3B
|
1:CLA310
|
4.4
|
76.5
|
1.0
|
C3A
|
1:CLA310
|
4.4
|
80.0
|
1.0
|
C2A
|
1:CLA310
|
4.5
|
68.0
|
1.0
|
C3
|
1:LHG317
|
4.7
|
83.9
|
1.0
|
NZ
|
1:LYS193
|
4.9
|
65.5
|
1.0
|
C6
|
1:LHG317
|
4.9
|
74.8
|
1.0
|
O5
|
1:LHG317
|
4.9
|
82.8
|
1.0
|
CBD
|
1:CLA310
|
5.0
|
79.1
|
1.0
|
C5
|
1:LHG317
|
5.0
|
87.0
|
1.0
|
|
Reference:
S.Capaldi,
Z.Guardini,
D.Montepietra,
V.F.Pagliuca,
A.Amelii,
D.M.V.Bonnet,
A.Chaves-Sanjuan,
L.Dall'osto,
R.Bassi.
Structural Determinants For Red-Shifted Absorption in Higher-Plants Photosystem I To Be Published.
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