Magnesium in PDB 9gd3: Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.

The structure of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. (pdb code 9gd3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna., PDB code: 9gd3:

Magnesium binding site 1 out of 1 in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg1503 b:7.5 occ:1.00 OE2 W:GLU514 2.2 7.5 1.0 OD1 W:ASP513 2.2 5.0 1.0 O1B W:ADP1501 2.7 4.4 1.0 OD2 W:ASP513 2.8 5.0 1.0 CG W:ASP513 2.8 5.0 1.0 CD W:GLU514 3.2 7.5 1.0 F3 W:BEF1502 3.3 12.7 1.0 OE1 W:GLU514 3.9 7.5 1.0 PB W:ADP1501 4.2 4.4 1.0 CG W:GLU514 4.2 7.5 1.0 CG2 W:ILE540 4.3 3.5 1.0 N W:GLU514 4.3 7.5 1.0 CB W:ASP513 4.3 5.0 1.0 BE W:BEF1502 4.3 12.7 1.0 F2 W:BEF1502 4.5 12.7 1.0 CE W:LYS407 4.7 3.3 1.0 O2B W:ADP1501 4.7 4.4 1.0 OG1 W:THR408 4.7 3.2 1.0 CA W:ASP513 4.9 5.0 1.0 O3B W:ADP1501 4.9 4.4 1.0

M.Engeholm, J.J.Roske, E.Oberbeckmann, C.Dienemann, M.Lidschreiber, P.Cramer, L.Farnung. Resolution of Transcription-Induced Hexasome-Nucleosome Complexes By CHD1 and Fact. Mol.Cell 2024.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2024.08.022