Magnesium in PDB 9gsd: Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)

All present enzymatic activity of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3):
7.2.2.10;

The structure of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) (pdb code 9gsd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3), PDB code: 9gsd:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:50.7 occ:1.00 F3 A:BEF1303 1.9 67.3 1.0 OD2 A:ASP454 2.0 54.7 1.0 O A:THR456 2.4 59.8 1.0 OD1 A:ASP775 2.7 53.6 1.0 BE A:BEF1303 3.1 59.8 1.0 CG A:ASP454 3.1 54.1 1.0 C A:THR456 3.6 49.4 1.0 OD1 A:ASP454 3.7 58.9 1.0 CG A:ASP775 3.8 59.1 1.0 F1 A:BEF1303 4.0 67.0 1.0 OD2 A:ASP779 4.1 60.7 1.0 OD2 A:ASP775 4.1 63.6 1.0 F2 A:BEF1303 4.2 56.3 1.0 O A:SER239 4.2 87.6 1.0 CB A:THR456 4.3 56.3 1.0 CB A:ASP454 4.3 46.6 1.0 CA A:THR456 4.3 49.9 1.0 N A:GLY776 4.4 58.5 1.0 N A:THR456 4.4 50.6 1.0 CA A:GLY776 4.5 52.4 1.0 OD1 A:ASN778 4.6 63.4 1.0 N A:GLY457 4.7 42.2 1.0 CA A:GLY457 4.9 47.4 1.0 CA A:GLY243 4.9 76.2 1.0 C A:ASP775 4.9 60.7 1.0 OG1 A:THR458 5.0 51.8 1.0

D.Vinayagam, S.Raunser, O.Sistel, U.Schulte, C.E.Constantin, D.Prumbaum, G.Zolles, B.Fakler. Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E1 State Without Calcium To Be Published.