Magnesium in PDB 9izm: Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex (pdb code 9izm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex, PDB code: 9izm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:43.7 occ:1.00 O4 B:U-29 4.1 46.2 1.0 O4 B:U-31 4.3 27.4 1.0 N6 B:A-5 4.3 32.2 1.0 O6 B:G-30 4.7 31.3 1.0 N6 B:A-6 4.8 46.6 1.0 C4 B:U-31 4.9 24.6 1.0 C5 B:U-31 5.0 25.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of CASLAMBDA2-Crrna Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:24.6 occ:1.00 OP1 B:G-30 1.9 20.9 1.0 OD1 A:ASP499 2.7 26.8 1.0 P B:G-30 3.2 22.9 1.0 CG A:ASP499 3.7 8.8 1.0 O5' B:G-30 3.9 38.3 1.0 OP2 B:U-29 3.9 37.9 1.0 OP2 B:G-30 3.9 23.7 1.0 OD2 A:ASP499 4.2 6.8 1.0 O3' B:U-31 4.4 38.6 1.0 NE2 A:GLN498 4.5 17.8 1.0 C5' B:G-30 4.5 26.0 1.0 OP1 B:U-29 4.6 34.0 1.0 P B:U-29 4.8 26.4 1.0 CB A:ASP499 4.9 4.1 1.0

S.N.Omura, H.Hirano, Y.Itoh, O.Nureki. Structural Basis For the Target Dna Cleavage and Guide Rna Processing By the Crispr-CASLAMBDA2 To Be Published.