Magnesium in PDB 9izq: Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State

The binding sites of Magnesium atom in the Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State (pdb code 9izq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State, PDB code: 9izq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:24.4 occ:1.00 OD1 A:ASP499 2.1 46.8 1.0 OP1 B:G-30 2.1 31.5 1.0 CG A:ASP499 3.1 39.3 1.0 P B:G-30 3.4 34.0 1.0 OD2 A:ASP499 3.6 39.8 1.0 OP2 B:G-30 3.9 31.1 1.0 O5' B:G-30 4.0 46.7 1.0 CB A:ASP499 4.4 24.9 1.0 OE1 A:GLN498 4.5 39.1 1.0 C5' B:G-30 4.5 32.4 1.0 O3' B:U-31 4.6 55.4 1.0 OP2 B:U-29 4.7 58.1 1.0 O A:ASN495 4.8 37.2 1.0 CA A:ASP499 4.9 21.3 1.0 N A:ASP499 5.0 33.2 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of CASLAMBDA2-Crrna-Target Dna Ternary Complex in the Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:32.2 occ:1.00 O4 B:U-31 3.8 44.4 1.0 C5 B:U-31 4.3 42.4 1.0 C4 B:U-31 4.3 45.8 1.0 O4 B:U-29 4.5 54.0 1.0 O6 B:G-30 4.7 44.4 1.0 N7 B:G-30 4.9 36.9 1.0

S.N.Omura, H.Hirano, Y.Itoh, O.Nureki. Structural Basis For the Target Dna Cleavage and Guide Rna Processing By the Crispr-CASLAMBDA2 To Be Published.