Magnesium in PDB 9kev: Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map)

Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map)

All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map):
2.7.7.6;

Other elements in 9kev:

The structure of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map) (pdb code 9kev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map), PDB code: 9kev:

Magnesium binding site 1 out of 1 in 9kev

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Magnesium Binding Sites List in 9kev

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Six Phop Molecules (Composite Map) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg2002 b:111.8 occ:1.00	OD1	D:ASP535	2.0	94.9	1.0
	N	D:ASP537	2.1	81.5	1.0
	C	D:ASP535	2.2	85.8	1.0
	N	D:PHE536	2.4	74.8	1.0
	O	D:ASP535	2.5	95.2	1.0
	CB	D:ASP535	2.5	88.3	1.0
	CG	D:ASP535	2.5	97.7	1.0
	OD2	D:ASP537	2.7	90.0	1.0
	CA	D:ASP535	2.8	82.3	1.0
	C	D:PHE536	3.0	84.9	1.0
	CB	D:ASP537	3.0	80.0	1.0
	CA	D:ASP537	3.0	73.6	1.0
	CG	D:ASP537	3.1	91.6	1.0
	CA	D:PHE536	3.2	74.9	1.0
	OD2	D:ASP539	3.6	86.5	1.0
	OD2	D:ASP535	3.8	102.4	1.0
	N	D:ASP535	3.8	81.4	1.0
	C	D:ASP537	4.1	81.1	1.0
	O	D:PHE536	4.1	91.3	1.0
	N	D:GLY538	4.2	70.3	1.0
	OD1	D:ASP537	4.2	102.3	1.0
	CG	D:ASP539	4.3	92.8	1.0
	CB	D:PHE536	4.5	72.3	1.0
	O	C:GLU732	4.7	82.8	1.0
	OD1	D:ASP539	4.8	91.0	1.0
	CB	C:ASP733	4.9	78.8	1.0
	OD1	C:ASP733	5.0	84.4	1.0

Reference:

J.Shi, Z.Feng, Q.Song, A.Wen, T.Liu, L.Xu, Z.Ye, S.Xu, F.Gao, L.Xiao, J.Zhu, K.Das, G.Zhao, J.Li, Y.Feng, W.Lin. Structural Insights Into Transcription Regulation of the Global Ompr/Phob Family Regulator Phop From Mycobacterium Tuberculosis Nat Commun V. 16 1573 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-56697-X

Page generated: Sat Aug 16 04:56:20 2025

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