Magnesium in PDB 9mty: Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage

The binding sites of Magnesium atom in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage (pdb code 9mty). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage, PDB code: 9mty:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:57.9 occ:1.00 OD1 A:ASP11 2.2 72.0 1.0 O3' D:DC-1 3.3 2.4 1.0 CG A:ASP11 3.4 72.0 1.0 C3' D:DC-1 3.6 2.4 1.0 OP1 F:DT1 3.6 0.0 1.0 OD1 A:ASP87 4.0 93.2 1.0 OD2 A:ASP11 4.0 72.0 1.0 O A:TRP12 4.2 63.3 1.0 OD2 A:ASP87 4.2 93.2 1.0 C5' F:DT1 4.5 0.0 1.0 CB A:ASP11 4.5 72.0 1.0 C2' D:DC-1 4.5 2.4 1.0 CG A:ASP87 4.6 93.2 1.0 O5' F:DT1 4.6 0.0 1.0 P F:DT1 4.7 0.0 1.0 CA A:ASP11 4.7 72.0 1.0 C A:ASP11 4.7 72.0 1.0 C4' D:DC-1 4.8 2.4 1.0 N A:TRP12 4.8 63.3 1.0 OE1 A:GLU43 5.0 66.5 1.0

Magnesium binding site 2 out of 4 in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:14.2 occ:1.00 OD1 A:ASP123 2.3 18.0 1.0 OP1 C:G11 2.3 1.7 1.0 CG A:ASP123 3.3 18.0 1.0 P C:G11 3.6 1.7 1.0 OD2 A:ASP123 3.6 18.0 1.0 OP2 C:C12 4.0 2.7 1.0 O5' C:G11 4.1 1.7 1.0 C5' C:G11 4.3 1.7 1.0 OP2 C:G11 4.3 1.7 1.0 O A:ALA119 4.4 20.3 1.0 NH1 B:ARG134 4.4 22.2 1.0 CD B:ARG134 4.6 22.2 1.0 CB A:ASP123 4.7 18.0 1.0 O3' C:A10 4.8 1.6 1.0 P C:C12 4.8 2.7 1.0 CB A:ALA119 4.9 20.3 1.0 OP1 C:C12 5.0 2.7 1.0 N A:ASP123 5.0 18.0 1.0

Magnesium binding site 3 out of 4 in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:56.0 occ:1.00 OD1 B:ASP11 2.1 57.4 1.0 OD2 B:ASP11 2.3 57.4 1.0 CG B:ASP11 2.5 57.4 1.0 OP1 G:DG1 3.9 4.3 1.0 CB B:ASP11 4.0 57.4 1.0 O3' E:DA-1 4.6 2.5 1.0 C3' E:DA-1 4.6 4.0 1.0 O B:TRP12 4.7 49.2 1.0 CA B:ASP11 4.7 57.4 1.0 P G:DG1 4.8 3.6 1.0 C5' G:DG1 4.8 0.3 1.0 C B:ASP11 4.8 57.4 1.0 CB B:ASP90 4.9 73.2 1.0 O B:ASP11 4.9 57.4 1.0 OD2 B:ASP90 4.9 73.2 1.0

Magnesium binding site 4 out of 4 in the Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Tigr-Tasr in Complex with Tigrna and Target Dna After Dna Cleavage within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:17.2 occ:1.00 OD1 B:ASP123 2.2 22.0 1.0 OP1 C:U29 2.2 1.6 1.0 CG B:ASP123 3.3 22.0 1.0 P C:U29 3.6 1.6 1.0 OD2 B:ASP123 3.8 22.0 1.0 O B:ALA119 4.1 22.5 1.0 O5' C:U29 4.2 1.6 1.0 NH1 A:ARG134 4.3 24.1 1.0 OP2 C:U29 4.3 1.6 1.0 OP2 C:U30 4.4 1.6 1.0 C5' C:U29 4.5 1.6 1.0 CB B:ASP123 4.6 22.0 1.0 O3' C:C28 4.7 1.6 1.0 CD A:ARG134 4.7 24.1 1.0 N B:ASP123 4.7 22.0 1.0 CA B:ASP123 4.8 22.0 1.0 C B:ALA119 4.9 22.5 1.0

G.Faure, M.Saito, M.E.Wilkinson, N.Quinones-Olvera, P.Xu, D.Flam-Shepherd, S.Kim, N.Reddy, S.Zhu, L.Evgeniou, E.V.Koonin, R.K.Macrae, F.Zhang. Tigr Systems: Dna-Targeting Small Rna Arrays in Prokaryotes and Their Viruses Reveal Evolutionary Links to Snornps To Be Published.