Magnesium in PDB 9p8t: Structure of Cloa Co-Expressed with Clob
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Cloa Co-Expressed with Clob
(pdb code 9p8t). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of Cloa Co-Expressed with Clob, PDB code: 9p8t:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 1 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg501
b:110.0
occ:1.00
|
NE2
|
A:HIS117
|
2.1
|
108.1
|
1.0
|
|
OD2
|
A:ASP118
|
2.1
|
115.5
|
1.0
|
|
NE2
|
A:HIS69
|
2.2
|
112.6
|
1.0
|
|
OD1
|
A:ASP242
|
2.4
|
115.2
|
1.0
|
|
OD2
|
A:ASP242
|
2.8
|
114.5
|
1.0
|
|
CD2
|
A:HIS69
|
2.9
|
110.6
|
1.0
|
|
CD2
|
A:HIS117
|
2.9
|
109.3
|
1.0
|
|
CG
|
A:ASP242
|
2.9
|
112.5
|
1.0
|
|
OH
|
A:TYR246
|
3.0
|
123.6
|
1.0
|
|
CE1
|
A:HIS117
|
3.2
|
109.1
|
1.0
|
|
CG
|
A:ASP118
|
3.3
|
119.9
|
1.0
|
|
CE1
|
A:HIS69
|
3.3
|
113.8
|
1.0
|
|
CZ
|
A:TYR246
|
3.4
|
128.1
|
1.0
|
|
CE2
|
A:TYR246
|
3.8
|
124.2
|
1.0
|
|
CE1
|
A:TYR246
|
4.0
|
126.9
|
1.0
|
|
OD1
|
A:ASP118
|
4.0
|
123.5
|
1.0
|
|
CG
|
A:HIS117
|
4.1
|
108.0
|
1.0
|
|
CG
|
A:HIS69
|
4.1
|
108.1
|
1.0
|
|
ND1
|
A:HIS117
|
4.2
|
108.8
|
1.0
|
|
ND1
|
A:HIS69
|
4.3
|
110.1
|
1.0
|
|
CB
|
A:ASP118
|
4.3
|
114.7
|
1.0
|
|
CB
|
A:ASP242
|
4.3
|
105.7
|
1.0
|
|
CD2
|
A:TYR246
|
4.7
|
119.3
|
1.0
|
|
CG2
|
A:VAL73
|
4.8
|
99.8
|
1.0
|
|
CD1
|
A:TYR246
|
4.9
|
121.9
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 2 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg501
b:109.6
occ:1.00
|
OD1
|
B:ASP242
|
2.2
|
115.2
|
1.0
|
|
NE2
|
B:HIS69
|
2.2
|
112.6
|
1.0
|
|
NE2
|
B:HIS117
|
2.3
|
108.1
|
1.0
|
|
OD2
|
B:ASP118
|
2.3
|
115.5
|
1.0
|
|
OD2
|
B:ASP242
|
2.7
|
114.5
|
1.0
|
|
CG
|
B:ASP242
|
2.7
|
112.5
|
1.0
|
|
OH
|
B:TYR246
|
2.9
|
123.6
|
1.0
|
|
CD2
|
B:HIS69
|
3.0
|
110.6
|
1.0
|
|
CD2
|
B:HIS117
|
3.0
|
109.3
|
1.0
|
|
CZ
|
B:TYR246
|
3.1
|
128.1
|
1.0
|
|
CE1
|
B:HIS69
|
3.2
|
113.8
|
1.0
|
|
CE1
|
B:HIS117
|
3.4
|
109.1
|
1.0
|
|
CG
|
B:ASP118
|
3.5
|
119.9
|
1.0
|
|
CE2
|
B:TYR246
|
3.6
|
124.2
|
1.0
|
|
CE1
|
B:TYR246
|
3.7
|
126.9
|
1.0
|
|
OD1
|
B:ASP118
|
4.1
|
123.5
|
1.0
|
|
CB
|
B:ASP242
|
4.2
|
105.7
|
1.0
|
|
CG
|
B:HIS69
|
4.2
|
108.1
|
1.0
|
|
CG
|
B:HIS117
|
4.3
|
108.0
|
1.0
|
|
ND1
|
B:HIS69
|
4.3
|
110.1
|
1.0
|
|
ND1
|
B:HIS117
|
4.4
|
108.8
|
1.0
|
|
CD2
|
B:TYR246
|
4.5
|
119.3
|
1.0
|
|
CB
|
B:ASP118
|
4.6
|
114.7
|
1.0
|
|
CD1
|
B:TYR246
|
4.6
|
121.9
|
1.0
|
|
CA
|
B:ASP242
|
4.8
|
103.5
|
1.0
|
|
CG2
|
B:VAL73
|
4.9
|
99.8
|
1.0
|
|
CG
|
B:TYR246
|
5.0
|
117.5
|
1.0
|
|
O
|
B:ASP242
|
5.0
|
111.1
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 3 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg501
b:110.0
occ:1.00
|
NE2
|
D:HIS117
|
2.1
|
108.1
|
1.0
|
|
OD2
|
D:ASP118
|
2.1
|
115.5
|
1.0
|
|
NE2
|
D:HIS69
|
2.2
|
112.6
|
1.0
|
|
OD1
|
D:ASP242
|
2.4
|
115.2
|
1.0
|
|
OD2
|
D:ASP242
|
2.8
|
114.5
|
1.0
|
|
CD2
|
D:HIS69
|
2.9
|
110.6
|
1.0
|
|
CD2
|
D:HIS117
|
2.9
|
109.3
|
1.0
|
|
CG
|
D:ASP242
|
2.9
|
112.5
|
1.0
|
|
OH
|
D:TYR246
|
3.0
|
123.6
|
1.0
|
|
CE1
|
D:HIS117
|
3.2
|
109.1
|
1.0
|
|
CG
|
D:ASP118
|
3.3
|
119.9
|
1.0
|
|
CE1
|
D:HIS69
|
3.3
|
113.8
|
1.0
|
|
CZ
|
D:TYR246
|
3.4
|
128.1
|
1.0
|
|
CE2
|
D:TYR246
|
3.8
|
124.2
|
1.0
|
|
CE1
|
D:TYR246
|
4.0
|
126.9
|
1.0
|
|
OD1
|
D:ASP118
|
4.0
|
123.5
|
1.0
|
|
CG
|
D:HIS117
|
4.1
|
108.0
|
1.0
|
|
CG
|
D:HIS69
|
4.1
|
108.1
|
1.0
|
|
ND1
|
D:HIS117
|
4.2
|
108.8
|
1.0
|
|
ND1
|
D:HIS69
|
4.3
|
110.1
|
1.0
|
|
CB
|
D:ASP118
|
4.3
|
114.7
|
1.0
|
|
CB
|
D:ASP242
|
4.3
|
105.7
|
1.0
|
|
CD2
|
D:TYR246
|
4.7
|
119.3
|
1.0
|
|
CG2
|
D:VAL73
|
4.8
|
99.8
|
1.0
|
|
CD1
|
D:TYR246
|
4.9
|
121.9
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 4 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg501
b:109.6
occ:1.00
|
OD1
|
E:ASP242
|
2.2
|
115.2
|
1.0
|
|
NE2
|
E:HIS69
|
2.2
|
112.6
|
1.0
|
|
NE2
|
E:HIS117
|
2.3
|
108.1
|
1.0
|
|
OD2
|
E:ASP118
|
2.3
|
115.5
|
1.0
|
|
OD2
|
E:ASP242
|
2.7
|
114.5
|
1.0
|
|
CG
|
E:ASP242
|
2.7
|
112.5
|
1.0
|
|
OH
|
E:TYR246
|
2.9
|
123.6
|
1.0
|
|
CD2
|
E:HIS69
|
3.0
|
110.6
|
1.0
|
|
CD2
|
E:HIS117
|
3.0
|
109.3
|
1.0
|
|
CZ
|
E:TYR246
|
3.1
|
128.1
|
1.0
|
|
CE1
|
E:HIS69
|
3.2
|
113.8
|
1.0
|
|
CE1
|
E:HIS117
|
3.4
|
109.1
|
1.0
|
|
CG
|
E:ASP118
|
3.5
|
119.9
|
1.0
|
|
CE2
|
E:TYR246
|
3.6
|
124.2
|
1.0
|
|
CE1
|
E:TYR246
|
3.7
|
126.9
|
1.0
|
|
OD1
|
E:ASP118
|
4.1
|
123.5
|
1.0
|
|
CB
|
E:ASP242
|
4.2
|
105.7
|
1.0
|
|
CG
|
E:HIS69
|
4.2
|
108.1
|
1.0
|
|
CG
|
E:HIS117
|
4.3
|
108.0
|
1.0
|
|
ND1
|
E:HIS69
|
4.3
|
110.1
|
1.0
|
|
ND1
|
E:HIS117
|
4.4
|
108.8
|
1.0
|
|
CD2
|
E:TYR246
|
4.5
|
119.3
|
1.0
|
|
CB
|
E:ASP118
|
4.6
|
114.7
|
1.0
|
|
CD1
|
E:TYR246
|
4.6
|
121.9
|
1.0
|
|
CA
|
E:ASP242
|
4.8
|
103.5
|
1.0
|
|
CG2
|
E:VAL73
|
4.9
|
99.8
|
1.0
|
|
CG
|
E:TYR246
|
5.0
|
117.5
|
1.0
|
|
O
|
E:ASP242
|
5.0
|
111.1
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 5 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg501
b:110.0
occ:1.00
|
NE2
|
G:HIS117
|
2.1
|
108.1
|
1.0
|
|
OD2
|
G:ASP118
|
2.1
|
115.5
|
1.0
|
|
NE2
|
G:HIS69
|
2.2
|
112.6
|
1.0
|
|
OD1
|
G:ASP242
|
2.4
|
115.2
|
1.0
|
|
OD2
|
G:ASP242
|
2.8
|
114.5
|
1.0
|
|
CD2
|
G:HIS69
|
2.9
|
110.6
|
1.0
|
|
CD2
|
G:HIS117
|
2.9
|
109.3
|
1.0
|
|
CG
|
G:ASP242
|
2.9
|
112.5
|
1.0
|
|
OH
|
G:TYR246
|
3.0
|
123.6
|
1.0
|
|
CE1
|
G:HIS117
|
3.2
|
109.1
|
1.0
|
|
CG
|
G:ASP118
|
3.3
|
119.9
|
1.0
|
|
CE1
|
G:HIS69
|
3.3
|
113.8
|
1.0
|
|
CZ
|
G:TYR246
|
3.4
|
128.1
|
1.0
|
|
CE2
|
G:TYR246
|
3.8
|
124.2
|
1.0
|
|
CE1
|
G:TYR246
|
4.0
|
126.9
|
1.0
|
|
OD1
|
G:ASP118
|
4.0
|
123.5
|
1.0
|
|
CG
|
G:HIS117
|
4.1
|
108.0
|
1.0
|
|
CG
|
G:HIS69
|
4.1
|
108.1
|
1.0
|
|
ND1
|
G:HIS117
|
4.2
|
108.8
|
1.0
|
|
ND1
|
G:HIS69
|
4.3
|
110.1
|
1.0
|
|
CB
|
G:ASP118
|
4.3
|
114.7
|
1.0
|
|
CB
|
G:ASP242
|
4.3
|
105.7
|
1.0
|
|
CD2
|
G:TYR246
|
4.7
|
119.3
|
1.0
|
|
CG2
|
G:VAL73
|
4.8
|
99.8
|
1.0
|
|
CD1
|
G:TYR246
|
4.9
|
121.9
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 6 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg501
b:109.6
occ:1.00
|
OD1
|
H:ASP242
|
2.2
|
115.2
|
1.0
|
|
NE2
|
H:HIS69
|
2.2
|
112.6
|
1.0
|
|
NE2
|
H:HIS117
|
2.3
|
108.1
|
1.0
|
|
OD2
|
H:ASP118
|
2.3
|
115.5
|
1.0
|
|
OD2
|
H:ASP242
|
2.7
|
114.5
|
1.0
|
|
CG
|
H:ASP242
|
2.7
|
112.5
|
1.0
|
|
OH
|
H:TYR246
|
2.9
|
123.6
|
1.0
|
|
CD2
|
H:HIS69
|
3.0
|
110.6
|
1.0
|
|
CD2
|
H:HIS117
|
3.0
|
109.3
|
1.0
|
|
CZ
|
H:TYR246
|
3.1
|
128.1
|
1.0
|
|
CE1
|
H:HIS69
|
3.2
|
113.8
|
1.0
|
|
CE1
|
H:HIS117
|
3.4
|
109.1
|
1.0
|
|
CG
|
H:ASP118
|
3.5
|
119.9
|
1.0
|
|
CE2
|
H:TYR246
|
3.6
|
124.2
|
1.0
|
|
CE1
|
H:TYR246
|
3.7
|
126.9
|
1.0
|
|
OD1
|
H:ASP118
|
4.1
|
123.5
|
1.0
|
|
CB
|
H:ASP242
|
4.2
|
105.7
|
1.0
|
|
CG
|
H:HIS69
|
4.2
|
108.1
|
1.0
|
|
CG
|
H:HIS117
|
4.3
|
108.0
|
1.0
|
|
ND1
|
H:HIS69
|
4.3
|
110.1
|
1.0
|
|
ND1
|
H:HIS117
|
4.4
|
108.8
|
1.0
|
|
CD2
|
H:TYR246
|
4.5
|
119.3
|
1.0
|
|
CB
|
H:ASP118
|
4.6
|
114.7
|
1.0
|
|
CD1
|
H:TYR246
|
4.6
|
121.9
|
1.0
|
|
CA
|
H:ASP242
|
4.8
|
103.5
|
1.0
|
|
CG2
|
H:VAL73
|
4.9
|
99.8
|
1.0
|
|
CG
|
H:TYR246
|
5.0
|
117.5
|
1.0
|
|
O
|
H:ASP242
|
5.0
|
111.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 7 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg501
b:110.0
occ:1.00
|
NE2
|
J:HIS117
|
2.1
|
108.1
|
1.0
|
|
OD2
|
J:ASP118
|
2.1
|
115.5
|
1.0
|
|
NE2
|
J:HIS69
|
2.2
|
112.6
|
1.0
|
|
OD1
|
J:ASP242
|
2.4
|
115.2
|
1.0
|
|
OD2
|
J:ASP242
|
2.8
|
114.5
|
1.0
|
|
CD2
|
J:HIS69
|
2.9
|
110.6
|
1.0
|
|
CD2
|
J:HIS117
|
2.9
|
109.3
|
1.0
|
|
CG
|
J:ASP242
|
2.9
|
112.5
|
1.0
|
|
OH
|
J:TYR246
|
3.0
|
123.6
|
1.0
|
|
CE1
|
J:HIS117
|
3.2
|
109.1
|
1.0
|
|
CG
|
J:ASP118
|
3.3
|
119.9
|
1.0
|
|
CE1
|
J:HIS69
|
3.3
|
113.8
|
1.0
|
|
CZ
|
J:TYR246
|
3.4
|
128.1
|
1.0
|
|
CE2
|
J:TYR246
|
3.8
|
124.2
|
1.0
|
|
CE1
|
J:TYR246
|
4.0
|
126.9
|
1.0
|
|
OD1
|
J:ASP118
|
4.0
|
123.5
|
1.0
|
|
CG
|
J:HIS117
|
4.1
|
108.0
|
1.0
|
|
CG
|
J:HIS69
|
4.1
|
108.1
|
1.0
|
|
ND1
|
J:HIS117
|
4.2
|
108.8
|
1.0
|
|
ND1
|
J:HIS69
|
4.3
|
110.1
|
1.0
|
|
CB
|
J:ASP118
|
4.3
|
114.7
|
1.0
|
|
CB
|
J:ASP242
|
4.3
|
105.7
|
1.0
|
|
CD2
|
J:TYR246
|
4.7
|
119.3
|
1.0
|
|
CG2
|
J:VAL73
|
4.8
|
99.8
|
1.0
|
|
CD1
|
J:TYR246
|
4.9
|
121.9
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 9p8t
Go back to
Magnesium Binding Sites List in 9p8t
Magnesium binding site 8 out
of 8 in the Structure of Cloa Co-Expressed with Clob
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Cloa Co-Expressed with Clob within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg501
b:109.6
occ:1.00
|
OD1
|
K:ASP242
|
2.2
|
115.2
|
1.0
|
|
NE2
|
K:HIS69
|
2.2
|
112.6
|
1.0
|
|
NE2
|
K:HIS117
|
2.3
|
108.1
|
1.0
|
|
OD2
|
K:ASP118
|
2.3
|
115.5
|
1.0
|
|
OD2
|
K:ASP242
|
2.7
|
114.5
|
1.0
|
|
CG
|
K:ASP242
|
2.7
|
112.5
|
1.0
|
|
OH
|
K:TYR246
|
2.9
|
123.6
|
1.0
|
|
CD2
|
K:HIS69
|
3.0
|
110.6
|
1.0
|
|
CD2
|
K:HIS117
|
3.0
|
109.3
|
1.0
|
|
CZ
|
K:TYR246
|
3.1
|
128.1
|
1.0
|
|
CE1
|
K:HIS69
|
3.2
|
113.8
|
1.0
|
|
CE1
|
K:HIS117
|
3.4
|
109.1
|
1.0
|
|
CG
|
K:ASP118
|
3.5
|
119.9
|
1.0
|
|
CE2
|
K:TYR246
|
3.6
|
124.2
|
1.0
|
|
CE1
|
K:TYR246
|
3.7
|
126.9
|
1.0
|
|
OD1
|
K:ASP118
|
4.1
|
123.5
|
1.0
|
|
CB
|
K:ASP242
|
4.2
|
105.7
|
1.0
|
|
CG
|
K:HIS69
|
4.2
|
108.1
|
1.0
|
|
CG
|
K:HIS117
|
4.3
|
108.0
|
1.0
|
|
ND1
|
K:HIS69
|
4.3
|
110.1
|
1.0
|
|
ND1
|
K:HIS117
|
4.4
|
108.8
|
1.0
|
|
CD2
|
K:TYR246
|
4.5
|
119.3
|
1.0
|
|
CB
|
K:ASP118
|
4.6
|
114.7
|
1.0
|
|
CD1
|
K:TYR246
|
4.6
|
121.9
|
1.0
|
|
CA
|
K:ASP242
|
4.8
|
103.5
|
1.0
|
|
CG2
|
K:VAL73
|
4.9
|
99.8
|
1.0
|
|
CG
|
K:TYR246
|
5.0
|
117.5
|
1.0
|
|
O
|
K:ASP242
|
5.0
|
111.1
|
1.0
|
|
Reference:
S.Yamaguchi,
S.G.Fernandez,
D.R.Wassarman,
M.Luders,
F.Schwede,
P.J.Kranzusch.
Activating and Inhibiting Nucleotide Signals Coordinate Bacterial Anti-Phage Defense. Biorxiv 2025.
ISSN: ISSN 2692-8205
PubMed: 40672243
DOI: 10.1101/2025.07.09.663793
Page generated: Sat Aug 23 06:07:44 2025
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