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Magnesium in PDB 1fc5: Crystal Structure of Molybdopterin Biosynthesis Moea Protein

Protein crystallography data

The structure of Crystal Structure of Molybdopterin Biosynthesis Moea Protein, PDB code: 1fc5 was solved by W.Huang, M.Cygler, Montreal-Kingston Bacterial Structural Genomicsinitiative (Bsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.640, 101.850, 103.440, 90.00, 90.00, 90.00
R / Rfree (%) 25.3 / 29.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Molybdopterin Biosynthesis Moea Protein (pdb code 1fc5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Molybdopterin Biosynthesis Moea Protein, PDB code: 1fc5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1fc5

Go back to Magnesium Binding Sites List in 1fc5
Magnesium binding site 1 out of 2 in the Crystal Structure of Molybdopterin Biosynthesis Moea Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Molybdopterin Biosynthesis Moea Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg4002

b:19.3
occ:1.00
O A:HOH4003 2.1 17.1 1.0
O B:HOH4005 2.1 17.8 1.0
O A:HOH4007 2.1 16.6 1.0
O A:HOH4008 2.1 16.2 1.0
O A:HOH4004 2.1 17.8 1.0
O A:HOH4006 2.1 16.9 1.0
OE2 A:GLU188 4.0 17.1 1.0
OE1 A:GLU188 4.2 19.4 1.0
O A:GLY252 4.3 17.5 1.0
O B:HOH2009 4.4 21.6 1.0
OD2 A:ASP228 4.4 19.2 1.0
OD1 A:ASP228 4.5 19.1 1.0
CD A:GLU188 4.5 20.3 1.0
CA A:GLY252 4.6 14.1 1.0
O A:HOH2064 4.7 21.9 1.0
O A:THR185 4.7 17.4 1.0
CA A:GLY186 4.7 17.3 1.0
CB B:ALA82 4.8 26.9 1.0
O A:HOH2089 4.8 24.8 1.0
O B:HOH2340 4.9 36.3 1.0
CG A:ASP228 4.9 21.1 1.0
C A:GLY252 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in 1fc5

Go back to Magnesium Binding Sites List in 1fc5
Magnesium binding site 2 out of 2 in the Crystal Structure of Molybdopterin Biosynthesis Moea Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Molybdopterin Biosynthesis Moea Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg4001

b:22.3
occ:1.00
O B:HOH4010 2.1 20.6 1.0
O B:HOH4013 2.1 18.7 1.0
O B:HOH4014 2.1 21.9 1.0
O B:HOH4011 2.1 22.3 1.0
O B:HOH4009 2.1 18.5 1.0
O B:HOH4012 2.1 21.8 1.0
OE2 B:GLU188 4.0 22.2 1.0
OD1 B:ASP228 4.3 18.8 1.0
O B:GLY252 4.3 19.0 1.0
O B:THR185 4.3 13.4 1.0
OE1 B:GLU188 4.4 23.3 1.0
CA B:GLY186 4.5 16.7 1.0
CA B:GLY252 4.5 19.9 1.0
CD B:GLU188 4.6 23.1 1.0
OD2 B:ASP228 4.7 20.2 1.0
C B:GLY252 4.8 20.6 1.0
O B:HOH2481 4.8 37.4 1.0
CG B:ASP228 4.9 21.8 1.0

Reference:

J.D.Schrag, W.Huang, J.Sivaraman, C.Smith, J.Plamondon, R.Larocque, A.Matte, M.Cygler. The Crystal Structure of Escherichia Coli Moea, A Protein From the Molybdopterin Synthesis Pathway. J.Mol.Biol. V. 310 419 2001.
ISSN: ISSN 0022-2836
PubMed: 11428898
DOI: 10.1006/JMBI.2001.4771
Page generated: Tue Aug 13 03:14:14 2024

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