Atomistry » Magnesium » PDB 1iah-1iru » 1ide
Atomistry »
  Magnesium »
    PDB 1iah-1iru »
      1ide »

Magnesium in PDB 1ide: Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination)

Enzymatic activity of Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination)

All present enzymatic activity of Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination):
1.1.1.42;

Protein crystallography data

The structure of Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination), PDB code: 1ide was solved by J.M.Bolduc, D.H.Dyer, W.G.Scott, P.Singer, R.M.Sweet, D.E.Koshland Junior, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.100, 105.100, 150.300, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination) (pdb code 1ide). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination), PDB code: 1ide:

Magnesium binding site 1 out of 1 in 1ide

Go back to Magnesium Binding Sites List in 1ide
Magnesium binding site 1 out of 1 in the Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isocitrate Dehydrogenase Y160F Mutant Steady-State Intermediate Complex (Laue Determination) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg417

b:1.0
occ:1.00
 OD1 A:ASP307 2.0 17.1 1.0
O A:HOH458 2.1 1.0 1.0
O2 A:ICT418 2.2 1.0 1.0
O A:HOH562 2.2 1.0 1.0
O7 A:ICT418 2.2 1.0 1.0
H2 A:HOH562 2.2 0.0 1.0
H1 A:HOH562 2.3 0.0 1.0
H1 A:HOH458 2.5 0.0 1.0
H2 A:HOH458 2.7 0.0 1.0
C1 A:ICT418 3.0 1.0 1.0
CG A:ASP307 3.2 15.6 1.0
C2 A:ICT418 3.2 1.0 1.0
HH12 A:ARG129 3.5 0.0 1.0
OD1 A:ASP311 3.7 24.5 1.0
OD2 A:ASP311 3.8 27.1 1.0
HH22 A:ARG129 3.8 0.0 1.0
CB A:ASP307 4.0 14.4 1.0
CG A:ASP311 4.0 23.1 1.0
OD2 A:ASP307 4.1 16.1 1.0
O6 A:ICT418 4.1 1.0 1.0
O1 A:ICT418 4.1 1.0 1.0
C3 A:ICT418 4.2 1.0 1.0
CA A:ASP307 4.3 15.1 1.0
O A:ASP307 4.3 12.3 1.0
C6 A:ICT418 4.4 1.0 1.0
HH12 A:ARG153 4.5 0.0 1.0
NH1 A:ARG129 4.5 17.7 1.0
C A:ASP307 4.5 12.0 1.0
NH2 A:ARG129 4.7 14.6 1.0
C4 A:ICT418 4.9 1.0 1.0

Reference:

J.M.Bolduc, D.H.Dyer, W.G.Scott, P.Singer, R.M.Sweet, D.E.Koshland Jr., B.L.Stoddard. Mutagenesis and Laue Structures of Enzyme Intermediates: Isocitrate Dehydrogenase. Science V. 268 1312 1995.
ISSN: ISSN 0036-8075
PubMed: 7761851
Page generated: Tue Aug 13 04:57:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy