Magnesium in PDB 1ijd: Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
Protein crystallography data
The structure of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050, PDB code: 1ijd
was solved by
K.Mcluskey,
S.M.Prince,
R.J.Cogdell,
N.W.Isaacs,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
42.00 /
3.00
|
|
Space group
|
H 3 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
117.260,
117.260,
295.920,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
n/a /
n/a
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
(pdb code 1ijd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050, PDB code: 1ijd:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 1 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg54
b:41.2
occ:1.00
|
MG
|
A:BCL54
|
0.0
|
41.2
|
1.0
|
|
NB
|
A:BCL54
|
2.0
|
28.0
|
1.0
|
|
ND
|
A:BCL54
|
2.0
|
31.1
|
1.0
|
|
NA
|
A:BCL54
|
2.1
|
34.0
|
1.0
|
|
NC
|
A:BCL54
|
2.2
|
42.5
|
1.0
|
|
NE2
|
A:HIS31
|
2.4
|
18.2
|
1.0
|
|
C4D
|
A:BCL54
|
2.9
|
28.4
|
1.0
|
|
C4B
|
A:BCL54
|
3.0
|
27.5
|
1.0
|
|
C1C
|
A:BCL54
|
3.0
|
27.8
|
1.0
|
|
C1B
|
A:BCL54
|
3.1
|
28.8
|
1.0
|
|
C4A
|
A:BCL54
|
3.1
|
29.5
|
1.0
|
|
C1A
|
A:BCL54
|
3.1
|
27.2
|
1.0
|
|
C1D
|
A:BCL54
|
3.2
|
27.6
|
1.0
|
|
C4C
|
A:BCL54
|
3.2
|
24.5
|
1.0
|
|
CE1
|
A:HIS31
|
3.3
|
19.6
|
1.0
|
|
CHC
|
A:BCL54
|
3.3
|
27.4
|
1.0
|
|
CHA
|
A:BCL54
|
3.4
|
29.1
|
1.0
|
|
CHB
|
A:BCL54
|
3.4
|
35.6
|
1.0
|
|
CD2
|
A:HIS31
|
3.5
|
19.6
|
1.0
|
|
CHD
|
A:BCL54
|
3.6
|
31.6
|
1.0
|
|
C3D
|
A:BCL54
|
4.1
|
28.6
|
1.0
|
|
C6'
|
B:BOG44
|
4.2
|
42.6
|
1.0
|
|
C3B
|
A:BCL54
|
4.2
|
28.1
|
1.0
|
|
C2B
|
A:BCL54
|
4.2
|
29.8
|
1.0
|
|
C5'
|
B:BOG44
|
4.3
|
74.0
|
1.0
|
|
C2D
|
A:BCL54
|
4.3
|
25.1
|
1.0
|
|
C2C
|
A:BCL54
|
4.4
|
23.1
|
1.0
|
|
ND1
|
A:HIS31
|
4.4
|
20.2
|
1.0
|
|
C7'
|
B:BOG44
|
4.4
|
93.0
|
1.0
|
|
C3C
|
A:BCL54
|
4.5
|
22.3
|
1.0
|
|
C3A
|
A:BCL54
|
4.5
|
24.1
|
1.0
|
|
C2A
|
A:BCL54
|
4.5
|
25.8
|
1.0
|
|
CMD
|
B:BCL45
|
4.5
|
27.4
|
1.0
|
|
CG
|
A:HIS31
|
4.5
|
19.4
|
1.0
|
|
C4'
|
B:BOG44
|
4.6
|
51.3
|
1.0
|
|
CBD
|
A:BCL54
|
4.8
|
30.5
|
1.0
|
|
CBC
|
A:BCL54
|
5.0
|
18.6
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 2 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg45
b:65.6
occ:1.00
|
MG
|
B:BCL45
|
0.0
|
65.6
|
1.0
|
|
ND
|
B:BCL45
|
2.0
|
26.4
|
1.0
|
|
NB
|
B:BCL45
|
2.0
|
41.1
|
1.0
|
|
NA
|
B:BCL45
|
2.1
|
43.0
|
1.0
|
|
NC
|
B:BCL45
|
2.1
|
33.9
|
1.0
|
|
NE2
|
B:HIS31
|
2.4
|
25.7
|
1.0
|
|
C4D
|
B:BCL45
|
2.9
|
27.4
|
1.0
|
|
C4B
|
B:BCL45
|
3.0
|
42.9
|
1.0
|
|
C1B
|
B:BCL45
|
3.0
|
49.7
|
1.0
|
|
C1C
|
B:BCL45
|
3.1
|
33.5
|
1.0
|
|
C4A
|
B:BCL45
|
3.1
|
32.1
|
1.0
|
|
C1A
|
B:BCL45
|
3.1
|
29.9
|
1.0
|
|
C1D
|
B:BCL45
|
3.2
|
26.1
|
1.0
|
|
C4C
|
B:BCL45
|
3.2
|
27.3
|
1.0
|
|
CD2
|
B:HIS31
|
3.3
|
22.5
|
1.0
|
|
CHC
|
B:BCL45
|
3.3
|
36.4
|
1.0
|
|
CHA
|
B:BCL45
|
3.4
|
27.5
|
1.0
|
|
CE1
|
B:HIS31
|
3.4
|
77.0
|
1.0
|
|
CHB
|
B:BCL45
|
3.4
|
42.8
|
1.0
|
|
CHD
|
B:BCL45
|
3.6
|
28.7
|
1.0
|
|
CBB
|
C:BCL54
|
3.8
|
13.2
|
1.0
|
|
CMB
|
C:BCL54
|
4.1
|
24.6
|
1.0
|
|
C3D
|
B:BCL45
|
4.1
|
27.3
|
1.0
|
|
C3B
|
B:BCL45
|
4.2
|
39.0
|
1.0
|
|
C2B
|
B:BCL45
|
4.2
|
55.0
|
1.0
|
|
C2D
|
B:BCL45
|
4.3
|
26.1
|
1.0
|
|
C2C
|
B:BCL45
|
4.4
|
25.2
|
1.0
|
|
CG
|
B:HIS31
|
4.5
|
21.1
|
1.0
|
|
C2A
|
B:BCL45
|
4.5
|
29.5
|
1.0
|
|
ND1
|
B:HIS31
|
4.5
|
24.9
|
1.0
|
|
C3A
|
B:BCL45
|
4.5
|
29.1
|
1.0
|
|
C3C
|
B:BCL45
|
4.5
|
24.7
|
1.0
|
|
CBD
|
B:BCL45
|
4.9
|
26.2
|
1.0
|
|
CMD
|
A:BCL54
|
5.0
|
28.1
|
1.0
|
|
C2B
|
C:BCL54
|
5.0
|
29.8
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 3 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg55
b:36.2
occ:1.00
|
MG
|
A:BCL55
|
0.0
|
36.2
|
1.0
|
|
ND
|
A:BCL55
|
2.0
|
14.8
|
1.0
|
|
NB
|
A:BCL55
|
2.0
|
18.7
|
1.0
|
|
NA
|
A:BCL55
|
2.1
|
19.4
|
1.0
|
|
NC
|
A:BCL55
|
2.2
|
23.0
|
1.0
|
|
O1
|
A:FME1
|
2.5
|
66.3
|
1.0
|
|
C4D
|
A:BCL55
|
2.9
|
14.9
|
1.0
|
|
C4B
|
A:BCL55
|
3.0
|
18.4
|
1.0
|
|
C1C
|
A:BCL55
|
3.1
|
23.7
|
1.0
|
|
C1A
|
A:BCL55
|
3.1
|
17.4
|
1.0
|
|
C1B
|
A:BCL55
|
3.1
|
18.4
|
1.0
|
|
C4A
|
A:BCL55
|
3.2
|
19.3
|
1.0
|
|
C1D
|
A:BCL55
|
3.2
|
14.3
|
1.0
|
|
C4C
|
A:BCL55
|
3.3
|
22.1
|
1.0
|
|
CHA
|
A:BCL55
|
3.3
|
15.9
|
1.0
|
|
CHC
|
A:BCL55
|
3.3
|
18.5
|
1.0
|
|
N
|
A:FME1
|
3.4
|
23.2
|
1.0
|
|
CN
|
A:FME1
|
3.5
|
15.2
|
1.0
|
|
CHB
|
A:BCL55
|
3.6
|
18.1
|
1.0
|
|
CHD
|
A:BCL55
|
3.7
|
16.3
|
1.0
|
|
O
|
B:HOH100
|
3.8
|
51.2
|
1.0
|
|
C3D
|
A:BCL55
|
4.1
|
14.5
|
1.0
|
|
C11
|
B:BCL45
|
4.2
|
22.8
|
1.0
|
|
C3B
|
A:BCL55
|
4.2
|
17.9
|
1.0
|
|
C2B
|
A:BCL55
|
4.3
|
18.1
|
1.0
|
|
C2D
|
A:BCL55
|
4.3
|
14.8
|
1.0
|
|
C9
|
B:BCL45
|
4.4
|
29.6
|
1.0
|
|
C2A
|
A:BCL55
|
4.5
|
18.5
|
1.0
|
|
C2C
|
A:BCL55
|
4.5
|
26.4
|
1.0
|
|
C3A
|
A:BCL55
|
4.5
|
19.4
|
1.0
|
|
C7
|
B:BCL45
|
4.6
|
24.1
|
1.0
|
|
C3C
|
A:BCL55
|
4.6
|
23.6
|
1.0
|
|
OD1
|
A:ASN2
|
4.7
|
0.0
|
1.0
|
|
CA
|
A:FME1
|
4.7
|
34.3
|
1.0
|
|
CG
|
A:GLN3
|
4.7
|
34.5
|
1.0
|
|
CD1
|
B:ILE17
|
4.8
|
17.6
|
1.0
|
|
CBD
|
A:BCL55
|
4.8
|
16.3
|
1.0
|
|
C8
|
B:BCL45
|
4.8
|
22.3
|
1.0
|
|
CB
|
A:FME1
|
4.9
|
27.9
|
1.0
|
|
C12
|
B:BCL45
|
4.9
|
23.6
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 4 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg54
b:41.2
occ:1.00
|
MG
|
C:BCL54
|
0.0
|
41.2
|
1.0
|
|
NB
|
C:BCL54
|
2.0
|
28.0
|
1.0
|
|
ND
|
C:BCL54
|
2.0
|
31.1
|
1.0
|
|
NA
|
C:BCL54
|
2.1
|
34.0
|
1.0
|
|
NC
|
C:BCL54
|
2.2
|
42.5
|
1.0
|
|
NE2
|
C:HIS31
|
2.4
|
18.2
|
1.0
|
|
C4D
|
C:BCL54
|
2.9
|
28.4
|
1.0
|
|
C4B
|
C:BCL54
|
3.0
|
27.5
|
1.0
|
|
C1C
|
C:BCL54
|
3.0
|
27.8
|
1.0
|
|
C1B
|
C:BCL54
|
3.1
|
28.8
|
1.0
|
|
C4A
|
C:BCL54
|
3.1
|
29.5
|
1.0
|
|
C1A
|
C:BCL54
|
3.1
|
27.2
|
1.0
|
|
C1D
|
C:BCL54
|
3.2
|
27.6
|
1.0
|
|
C4C
|
C:BCL54
|
3.2
|
24.5
|
1.0
|
|
CE1
|
C:HIS31
|
3.3
|
19.6
|
1.0
|
|
CHC
|
C:BCL54
|
3.3
|
27.4
|
1.0
|
|
CHA
|
C:BCL54
|
3.4
|
29.1
|
1.0
|
|
CHB
|
C:BCL54
|
3.4
|
35.6
|
1.0
|
|
CD2
|
C:HIS31
|
3.5
|
19.6
|
1.0
|
|
CHD
|
C:BCL54
|
3.6
|
31.6
|
1.0
|
|
C3D
|
C:BCL54
|
4.1
|
28.6
|
1.0
|
|
C6'
|
D:BOG44
|
4.2
|
42.6
|
1.0
|
|
C3B
|
C:BCL54
|
4.2
|
28.1
|
1.0
|
|
C2B
|
C:BCL54
|
4.2
|
29.8
|
1.0
|
|
C5'
|
D:BOG44
|
4.3
|
74.0
|
1.0
|
|
C2D
|
C:BCL54
|
4.3
|
25.1
|
1.0
|
|
C2C
|
C:BCL54
|
4.4
|
23.1
|
1.0
|
|
ND1
|
C:HIS31
|
4.4
|
20.2
|
1.0
|
|
C7'
|
D:BOG44
|
4.4
|
93.0
|
1.0
|
|
C3C
|
C:BCL54
|
4.5
|
22.3
|
1.0
|
|
C3A
|
C:BCL54
|
4.5
|
24.1
|
1.0
|
|
C2A
|
C:BCL54
|
4.5
|
25.8
|
1.0
|
|
CMD
|
D:BCL45
|
4.5
|
27.4
|
1.0
|
|
CG
|
C:HIS31
|
4.5
|
19.4
|
1.0
|
|
C4'
|
D:BOG44
|
4.6
|
51.3
|
1.0
|
|
CBD
|
C:BCL54
|
4.8
|
30.5
|
1.0
|
|
CBC
|
C:BCL54
|
5.0
|
18.6
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 5 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg45
b:65.6
occ:1.00
|
MG
|
D:BCL45
|
0.0
|
65.6
|
1.0
|
|
ND
|
D:BCL45
|
2.0
|
26.4
|
1.0
|
|
NB
|
D:BCL45
|
2.0
|
41.1
|
1.0
|
|
NA
|
D:BCL45
|
2.1
|
43.0
|
1.0
|
|
NC
|
D:BCL45
|
2.1
|
33.9
|
1.0
|
|
NE2
|
D:HIS31
|
2.4
|
25.7
|
1.0
|
|
C4D
|
D:BCL45
|
2.9
|
27.4
|
1.0
|
|
C4B
|
D:BCL45
|
3.0
|
42.9
|
1.0
|
|
C1B
|
D:BCL45
|
3.0
|
49.7
|
1.0
|
|
C1C
|
D:BCL45
|
3.1
|
33.5
|
1.0
|
|
C4A
|
D:BCL45
|
3.1
|
32.1
|
1.0
|
|
C1A
|
D:BCL45
|
3.1
|
29.9
|
1.0
|
|
C1D
|
D:BCL45
|
3.2
|
26.1
|
1.0
|
|
C4C
|
D:BCL45
|
3.2
|
27.3
|
1.0
|
|
CD2
|
D:HIS31
|
3.3
|
22.5
|
1.0
|
|
CHC
|
D:BCL45
|
3.3
|
36.4
|
1.0
|
|
CHA
|
D:BCL45
|
3.4
|
27.5
|
1.0
|
|
CE1
|
D:HIS31
|
3.4
|
77.0
|
1.0
|
|
CHB
|
D:BCL45
|
3.4
|
42.8
|
1.0
|
|
CHD
|
D:BCL45
|
3.6
|
28.7
|
1.0
|
|
CBB
|
E:BCL54
|
3.8
|
13.2
|
1.0
|
|
CMB
|
E:BCL54
|
4.1
|
24.6
|
1.0
|
|
C3D
|
D:BCL45
|
4.1
|
27.3
|
1.0
|
|
C3B
|
D:BCL45
|
4.2
|
39.0
|
1.0
|
|
C2B
|
D:BCL45
|
4.2
|
55.0
|
1.0
|
|
C2D
|
D:BCL45
|
4.3
|
26.1
|
1.0
|
|
C2C
|
D:BCL45
|
4.4
|
25.2
|
1.0
|
|
CG
|
D:HIS31
|
4.5
|
21.1
|
1.0
|
|
C2A
|
D:BCL45
|
4.5
|
29.5
|
1.0
|
|
ND1
|
D:HIS31
|
4.5
|
24.9
|
1.0
|
|
C3A
|
D:BCL45
|
4.5
|
29.1
|
1.0
|
|
C3C
|
D:BCL45
|
4.5
|
24.7
|
1.0
|
|
CBD
|
D:BCL45
|
4.9
|
26.2
|
1.0
|
|
CMD
|
C:BCL54
|
5.0
|
28.1
|
1.0
|
|
C2B
|
E:BCL54
|
5.0
|
29.8
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 6 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg55
b:36.2
occ:1.00
|
MG
|
C:BCL55
|
0.0
|
36.2
|
1.0
|
|
ND
|
C:BCL55
|
2.0
|
14.8
|
1.0
|
|
NB
|
C:BCL55
|
2.0
|
18.7
|
1.0
|
|
NA
|
C:BCL55
|
2.1
|
19.4
|
1.0
|
|
NC
|
C:BCL55
|
2.2
|
23.0
|
1.0
|
|
O1
|
C:FME1
|
2.5
|
66.3
|
1.0
|
|
C4D
|
C:BCL55
|
2.9
|
14.9
|
1.0
|
|
C4B
|
C:BCL55
|
3.0
|
18.4
|
1.0
|
|
C1C
|
C:BCL55
|
3.1
|
23.7
|
1.0
|
|
C1A
|
C:BCL55
|
3.1
|
17.4
|
1.0
|
|
C1B
|
C:BCL55
|
3.1
|
18.4
|
1.0
|
|
C4A
|
C:BCL55
|
3.2
|
19.3
|
1.0
|
|
C1D
|
C:BCL55
|
3.2
|
14.3
|
1.0
|
|
C4C
|
C:BCL55
|
3.3
|
22.1
|
1.0
|
|
CHA
|
C:BCL55
|
3.3
|
15.9
|
1.0
|
|
CHC
|
C:BCL55
|
3.3
|
18.5
|
1.0
|
|
N
|
C:FME1
|
3.4
|
23.2
|
1.0
|
|
CN
|
C:FME1
|
3.5
|
15.2
|
1.0
|
|
CHB
|
C:BCL55
|
3.6
|
18.1
|
1.0
|
|
CHD
|
C:BCL55
|
3.7
|
16.3
|
1.0
|
|
O
|
C:HOH114
|
3.8
|
51.2
|
1.0
|
|
C3D
|
C:BCL55
|
4.1
|
14.5
|
1.0
|
|
C11
|
D:BCL45
|
4.2
|
22.8
|
1.0
|
|
C3B
|
C:BCL55
|
4.2
|
17.9
|
1.0
|
|
C2B
|
C:BCL55
|
4.3
|
18.1
|
1.0
|
|
C2D
|
C:BCL55
|
4.3
|
14.8
|
1.0
|
|
C9
|
D:BCL45
|
4.4
|
29.6
|
1.0
|
|
C2A
|
C:BCL55
|
4.5
|
18.5
|
1.0
|
|
C2C
|
C:BCL55
|
4.5
|
26.4
|
1.0
|
|
C3A
|
C:BCL55
|
4.5
|
19.4
|
1.0
|
|
C7
|
D:BCL45
|
4.6
|
24.1
|
1.0
|
|
C3C
|
C:BCL55
|
4.6
|
23.6
|
1.0
|
|
OD1
|
C:ASN2
|
4.7
|
0.0
|
1.0
|
|
CA
|
C:FME1
|
4.7
|
34.3
|
1.0
|
|
CG
|
C:GLN3
|
4.7
|
34.5
|
1.0
|
|
CD1
|
D:ILE17
|
4.8
|
17.6
|
1.0
|
|
CBD
|
C:BCL55
|
4.8
|
16.3
|
1.0
|
|
C8
|
D:BCL45
|
4.8
|
22.3
|
1.0
|
|
CB
|
C:FME1
|
4.9
|
27.9
|
1.0
|
|
C12
|
D:BCL45
|
4.9
|
23.6
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 7 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg54
b:41.2
occ:1.00
|
MG
|
E:BCL54
|
0.0
|
41.2
|
1.0
|
|
NB
|
E:BCL54
|
2.0
|
28.0
|
1.0
|
|
ND
|
E:BCL54
|
2.0
|
31.1
|
1.0
|
|
NA
|
E:BCL54
|
2.1
|
34.0
|
1.0
|
|
NC
|
E:BCL54
|
2.2
|
42.5
|
1.0
|
|
NE2
|
E:HIS31
|
2.4
|
18.2
|
1.0
|
|
C4D
|
E:BCL54
|
2.9
|
28.4
|
1.0
|
|
C4B
|
E:BCL54
|
3.0
|
27.5
|
1.0
|
|
C1C
|
E:BCL54
|
3.0
|
27.8
|
1.0
|
|
C1B
|
E:BCL54
|
3.1
|
28.8
|
1.0
|
|
C4A
|
E:BCL54
|
3.1
|
29.5
|
1.0
|
|
C1A
|
E:BCL54
|
3.1
|
27.2
|
1.0
|
|
C1D
|
E:BCL54
|
3.2
|
27.6
|
1.0
|
|
C4C
|
E:BCL54
|
3.2
|
24.5
|
1.0
|
|
CE1
|
E:HIS31
|
3.3
|
19.6
|
1.0
|
|
CHC
|
E:BCL54
|
3.3
|
27.4
|
1.0
|
|
CHA
|
E:BCL54
|
3.4
|
29.1
|
1.0
|
|
CHB
|
E:BCL54
|
3.4
|
35.6
|
1.0
|
|
CD2
|
E:HIS31
|
3.5
|
19.6
|
1.0
|
|
CHD
|
E:BCL54
|
3.6
|
31.6
|
1.0
|
|
C3D
|
E:BCL54
|
4.1
|
28.6
|
1.0
|
|
C6'
|
F:BOG44
|
4.2
|
42.6
|
1.0
|
|
C3B
|
E:BCL54
|
4.2
|
28.1
|
1.0
|
|
C2B
|
E:BCL54
|
4.2
|
29.8
|
1.0
|
|
C5'
|
F:BOG44
|
4.3
|
74.0
|
1.0
|
|
C2D
|
E:BCL54
|
4.3
|
25.1
|
1.0
|
|
C2C
|
E:BCL54
|
4.4
|
23.1
|
1.0
|
|
ND1
|
E:HIS31
|
4.4
|
20.2
|
1.0
|
|
C7'
|
F:BOG44
|
4.4
|
93.0
|
1.0
|
|
C3C
|
E:BCL54
|
4.5
|
22.3
|
1.0
|
|
C3A
|
E:BCL54
|
4.5
|
24.1
|
1.0
|
|
C2A
|
E:BCL54
|
4.5
|
25.8
|
1.0
|
|
CMD
|
F:BCL45
|
4.5
|
27.4
|
1.0
|
|
CG
|
E:HIS31
|
4.5
|
19.4
|
1.0
|
|
C4'
|
F:BOG44
|
4.6
|
51.3
|
1.0
|
|
CBD
|
E:BCL54
|
4.8
|
30.5
|
1.0
|
|
CBC
|
E:BCL54
|
5.0
|
18.6
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 8 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg45
b:65.6
occ:1.00
|
MG
|
F:BCL45
|
0.0
|
65.6
|
1.0
|
|
ND
|
F:BCL45
|
2.0
|
26.4
|
1.0
|
|
NB
|
F:BCL45
|
2.0
|
41.1
|
1.0
|
|
NA
|
F:BCL45
|
2.1
|
43.0
|
1.0
|
|
NC
|
F:BCL45
|
2.1
|
33.9
|
1.0
|
|
NE2
|
F:HIS31
|
2.4
|
25.7
|
1.0
|
|
C4D
|
F:BCL45
|
2.9
|
27.4
|
1.0
|
|
C4B
|
F:BCL45
|
3.0
|
42.9
|
1.0
|
|
C1B
|
F:BCL45
|
3.0
|
49.7
|
1.0
|
|
C1C
|
F:BCL45
|
3.1
|
33.5
|
1.0
|
|
C4A
|
F:BCL45
|
3.1
|
32.1
|
1.0
|
|
C1A
|
F:BCL45
|
3.1
|
29.9
|
1.0
|
|
C1D
|
F:BCL45
|
3.2
|
26.1
|
1.0
|
|
C4C
|
F:BCL45
|
3.2
|
27.3
|
1.0
|
|
CD2
|
F:HIS31
|
3.3
|
22.5
|
1.0
|
|
CHC
|
F:BCL45
|
3.3
|
36.4
|
1.0
|
|
CHA
|
F:BCL45
|
3.4
|
27.5
|
1.0
|
|
CE1
|
F:HIS31
|
3.4
|
77.0
|
1.0
|
|
CHB
|
F:BCL45
|
3.4
|
42.8
|
1.0
|
|
CHD
|
F:BCL45
|
3.6
|
28.7
|
1.0
|
|
C3D
|
F:BCL45
|
4.1
|
27.3
|
1.0
|
|
C3B
|
F:BCL45
|
4.2
|
39.0
|
1.0
|
|
C2B
|
F:BCL45
|
4.2
|
55.0
|
1.0
|
|
C2D
|
F:BCL45
|
4.3
|
26.1
|
1.0
|
|
C2C
|
F:BCL45
|
4.4
|
25.2
|
1.0
|
|
CG
|
F:HIS31
|
4.5
|
21.1
|
1.0
|
|
C2A
|
F:BCL45
|
4.5
|
29.5
|
1.0
|
|
ND1
|
F:HIS31
|
4.5
|
24.9
|
1.0
|
|
C3A
|
F:BCL45
|
4.5
|
29.1
|
1.0
|
|
C3C
|
F:BCL45
|
4.5
|
24.7
|
1.0
|
|
CBD
|
F:BCL45
|
4.9
|
26.2
|
1.0
|
|
CMD
|
E:BCL54
|
5.0
|
28.1
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 1ijd
Go back to
Magnesium Binding Sites List in 1ijd
Magnesium binding site 9 out
of 9 in the Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystallographic Structure of the LH3 Complex From Rhodopseudomonas Acidophila Strain 7050 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg55
b:36.2
occ:1.00
|
MG
|
E:BCL55
|
0.0
|
36.2
|
1.0
|
|
ND
|
E:BCL55
|
2.0
|
14.8
|
1.0
|
|
NB
|
E:BCL55
|
2.0
|
18.7
|
1.0
|
|
NA
|
E:BCL55
|
2.1
|
19.4
|
1.0
|
|
NC
|
E:BCL55
|
2.2
|
23.0
|
1.0
|
|
O1
|
E:FME1
|
2.5
|
66.3
|
1.0
|
|
C4D
|
E:BCL55
|
2.9
|
14.9
|
1.0
|
|
C4B
|
E:BCL55
|
3.0
|
18.4
|
1.0
|
|
C1C
|
E:BCL55
|
3.1
|
23.7
|
1.0
|
|
C1A
|
E:BCL55
|
3.1
|
17.4
|
1.0
|
|
C1B
|
E:BCL55
|
3.1
|
18.4
|
1.0
|
|
C4A
|
E:BCL55
|
3.2
|
19.3
|
1.0
|
|
C1D
|
E:BCL55
|
3.2
|
14.3
|
1.0
|
|
C4C
|
E:BCL55
|
3.3
|
22.1
|
1.0
|
|
CHA
|
E:BCL55
|
3.3
|
15.9
|
1.0
|
|
CHC
|
E:BCL55
|
3.3
|
18.5
|
1.0
|
|
N
|
E:FME1
|
3.4
|
23.2
|
1.0
|
|
CN
|
E:FME1
|
3.5
|
15.2
|
1.0
|
|
CHB
|
E:BCL55
|
3.6
|
18.1
|
1.0
|
|
CHD
|
E:BCL55
|
3.7
|
16.3
|
1.0
|
|
O
|
E:HOH128
|
3.7
|
51.2
|
1.0
|
|
C3D
|
E:BCL55
|
4.1
|
14.5
|
1.0
|
|
C11
|
F:BCL45
|
4.2
|
22.8
|
1.0
|
|
C3B
|
E:BCL55
|
4.2
|
17.9
|
1.0
|
|
C2B
|
E:BCL55
|
4.3
|
18.1
|
1.0
|
|
C2D
|
E:BCL55
|
4.3
|
14.8
|
1.0
|
|
C9
|
F:BCL45
|
4.4
|
29.6
|
1.0
|
|
C2A
|
E:BCL55
|
4.5
|
18.5
|
1.0
|
|
C2C
|
E:BCL55
|
4.5
|
26.4
|
1.0
|
|
C3A
|
E:BCL55
|
4.5
|
19.4
|
1.0
|
|
C7
|
F:BCL45
|
4.6
|
24.1
|
1.0
|
|
C3C
|
E:BCL55
|
4.6
|
23.6
|
1.0
|
|
OD1
|
E:ASN2
|
4.7
|
0.0
|
1.0
|
|
CA
|
E:FME1
|
4.7
|
34.3
|
1.0
|
|
CG
|
E:GLN3
|
4.7
|
34.5
|
1.0
|
|
CD1
|
F:ILE17
|
4.8
|
17.6
|
1.0
|
|
CBD
|
E:BCL55
|
4.8
|
16.3
|
1.0
|
|
C8
|
F:BCL45
|
4.8
|
22.3
|
1.0
|
|
CB
|
E:FME1
|
4.9
|
27.9
|
1.0
|
|
C12
|
F:BCL45
|
4.9
|
23.6
|
1.0
|
|
Reference:
K.Mcluskey,
S.M.Prince,
R.J.Cogdell,
N.W.Isaacs.
The Crystallographic Structure of the B800-820 LH3 Light-Harvesting Complex From the Purple Bacteria Rhodopseudomonas Acidophila Strain 7050. Biochemistry V. 40 8783 2001.
ISSN: ISSN 0006-2960
PubMed: 11467938
DOI: 10.1021/BI010309A
Page generated: Tue Aug 13 05:01:11 2024
|
