Atomistry » Magnesium » PDB 1s9d-1so5 » 1s9d
Atomistry »
  Magnesium »
    PDB 1s9d-1so5 »
      1s9d »

Magnesium in PDB 1s9d: ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain

Protein crystallography data

The structure of ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain, PDB code: 1s9d was solved by L.Renault, B.Guibert, J.Cherfils, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.88 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 111.462, 111.462, 74.534, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain (pdb code 1s9d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain, PDB code: 1s9d:

Magnesium binding site 1 out of 1 in 1s9d

Go back to Magnesium Binding Sites List in 1s9d
Magnesium binding site 1 out of 1 in the ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of ARF1[Delta 1-17]-Gdp-Mg in Complex with Brefeldin A and A SEC7 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:24.3
occ:1.00
O A:HOH432 2.0 21.8 1.0
O A:HOH419 2.0 23.1 1.0
OG1 A:THR31 2.1 13.4 1.0
O1B A:GDP401 2.1 23.1 1.0
O A:HOH544 2.1 26.4 1.0
O A:HOH458 2.2 26.1 1.0
CB A:THR31 3.1 16.2 1.0
PB A:GDP401 3.2 26.6 1.0
O3B A:GDP401 3.4 26.9 1.0
N A:THR31 3.9 14.2 1.0
OE1 A:GLU54 3.9 17.6 1.0
CA A:THR31 4.0 13.6 1.0
OE2 A:GLU54 4.1 16.8 1.0
O2A A:GDP401 4.1 22.3 1.0
CG2 A:THR31 4.2 16.6 1.0
O A:HOH457 4.2 28.2 1.0
O2B A:GDP401 4.3 24.5 1.0
O3A A:GDP401 4.3 26.9 1.0
O A:HOH526 4.3 45.9 1.0
CD A:GLU54 4.4 18.0 1.0
O A:HOH498 4.5 36.4 1.0
O A:HOH494 4.5 33.0 1.0
PA A:GDP401 4.6 25.4 1.0
O A:HOH456 4.8 28.2 1.0
O1A A:GDP401 4.9 25.4 1.0
O A:HOH482 4.9 35.6 1.0
C A:LYS30 5.0 13.2 1.0
CB A:LYS30 5.0 15.2 1.0
NZ A:LYS30 5.0 13.3 1.0

Reference:

L.Renault, B.Guibert, J.Cherfils. Structural Snapshots of the Mechanism and Inhibition of A Guanine Nucleotide Exchange Factor Nature V. 426 525 2003.
ISSN: ISSN 0028-0836
PubMed: 14654833
DOI: 10.1038/NATURE02197
Page generated: Tue Aug 13 13:41:54 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy