Magnesium in PDB 1uik: Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer

The structure of Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer, PDB code: 1uik was solved by Y.Maruyama, N.Maruyama, B.Mikami, S.Utsumi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	164.960, 164.960, 110.050, 90.00, 90.00, 120.00
R / Rfree (%)	22.1 / 26.9

The binding sites of Magnesium atom in the Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer (pdb code 1uik). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer, PDB code: 1uik:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:47.3 occ:1.00 O A:HOH1171 2.1 31.6 1.0 O A:HOH1026 2.2 21.3 1.0 O A:HOH1116 2.3 25.7 1.0 O A:HOH1082 2.3 42.1 1.0 O A:ILE333 4.3 26.1 1.0 OD1 A:ASN197 4.3 22.0 1.0 O A:HOH1096 4.3 38.4 1.0 O A:HOH1174 4.4 28.2 1.0 OE2 A:GLU332 4.5 31.1 1.0 CA A:SER334 4.8 23.9 1.0 CB A:ASN197 5.0 24.8 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:49.8 occ:1.00 O B:HOH1143 2.0 39.6 1.0 O B:HOH1011 2.4 18.9 1.0 OD1 B:ASN197 4.1 23.7 1.0 O B:HOH1097 4.4 28.1 1.0 O B:HOH1076 4.4 32.0 1.0 O B:HOH1045 4.4 20.6 1.0 O B:HOH1099 4.4 28.8 1.0 O B:ILE333 4.5 27.6 1.0 OE2 B:GLU332 4.8 35.4 1.0 CA B:SER334 4.8 29.4 1.0 CB B:ASN197 4.9 24.6 1.0 CG B:ASN197 5.0 25.9 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Soybean Beta-Conglycinin Alpha Prime Homotrimer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1003 b:34.3 occ:0.50 O C:HOH1156 2.1 28.6 1.0 O C:HOH1020 2.2 20.8 1.0 O C:HOH1157 2.7 35.7 0.5 OD1 C:ASN197 4.2 22.3 1.0 OE1 C:GLU332 4.4 34.8 1.0 O C:HOH1119 4.4 27.4 1.0 O C:HOH1079 4.5 28.2 1.0 O C:HOH1088 4.5 35.5 1.0 O C:ILE333 4.6 27.7 1.0 CE C:LYS335 4.9 32.3 1.0 CB C:ASN197 4.9 25.1 1.0 NZ C:LYS335 4.9 31.8 1.0 CA C:SER334 5.0 27.2 1.0

Y.Maruyama, N.Maruyama, B.Mikami, S.Utsumi. Structure of the Core Region of the Soybean Beta-Conglycinin Alpha' Subunit. Acta Crystallogr.,Sect.D V. 60 289 2004.
ISSN: ISSN 0907-4449
PubMed: 14747705
DOI: 10.1107/S0907444903027367