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Magnesium in PDB 1x1t: Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+

Enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+

All present enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+:
1.1.1.30;

Protein crystallography data

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+, PDB code: 1x1t was solved by K.Ito, Y.Nakajima, E.Ichihara, K.Ogawa, T.Yoshimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.52
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.765, 99.970, 109.585, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 21.3

Other elements in 1x1t:

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ also contains other interesting chemical elements:

Arsenic (As) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ (pdb code 1x1t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+, PDB code: 1x1t:

Magnesium binding site 1 out of 1 in 1x1t

Go back to Magnesium Binding Sites List in 1x1t
Magnesium binding site 1 out of 1 in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:2.2
occ:1.00
OD2 A:ASP38 2.1 13.8 1.0
O A:HOH502 2.3 9.5 1.0
O A:HOH501 2.3 5.8 1.0
CG A:ASP38 2.8 15.6 1.0
OD1 A:ASP38 2.9 15.6 1.0
O A:HOH785 3.9 43.6 1.0
O A:HOH556 4.2 19.5 1.0
CB A:ASP38 4.2 15.1 1.0
CB A:ALA40 4.3 16.9 1.0
O A:HOH606 4.4 26.7 1.0
N A:ALA40 4.6 16.2 1.0
CA A:ASP38 4.8 15.9 1.0
N A:ALA39 4.8 15.8 1.0

Reference:

K.Ito, Y.Nakajima, E.Ichihara, K.Ogawa, N.Katayama, K.Nakashima, T.Yoshimoto. D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme J.Mol.Biol. V. 355 722 2006.
ISSN: ISSN 0022-2836
PubMed: 16325199
DOI: 10.1016/J.JMB.2005.10.072
Page generated: Tue Aug 13 17:28:10 2024

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