Magnesium in PDB 1xdn: High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1

The structure of High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1, PDB code: 1xdn was solved by J.Deng, A.Schnaufer, R.Salavati, K.D.Stuart, W.G.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.911, 58.579, 52.984, 90.00, 100.23, 90.00
R / Rfree (%)	12.8 / 14.8

The binding sites of Magnesium atom in the High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1 (pdb code 1xdn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1, PDB code: 1xdn:

Magnesium binding site 1 out of 1 in the High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of High Resolution Crystal Structure of An Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:5.2 occ:1.00 O A:HOH530 2.0 5.9 1.0 O2B A:ATP501 2.1 5.8 1.0 O A:HOH514 2.1 5.9 1.0 O1G A:ATP501 2.1 6.5 1.0 O A:HOH520 2.1 6.6 1.0 O A:HOH528 2.1 5.6 1.0 PB A:ATP501 3.2 6.5 1.0 PG A:ATP501 3.2 8.1 1.0 O3B A:ATP501 3.5 7.5 1.0 O3G A:ATP501 3.6 9.1 1.0 O A:HOH639 3.8 29.9 1.0 NZ A:LYS87 3.9 6.1 1.0 O1B A:ATP501 3.9 8.6 1.0 OE2 A:GLU159 3.9 5.4 1.0 O A:HOH886 4.1 25.0 1.0 ND1 A:HIS89 4.1 7.9 1.0 OE1 A:GLU283 4.2 7.0 1.0 OE2 A:GLU283 4.4 8.2 1.0 O A:GLY90 4.4 5.3 1.0 O4' A:ATP501 4.5 5.0 1.0 O3A A:ATP501 4.5 6.9 1.0 NH2 A:ARG309 4.5 10.0 1.0 O2G A:ATP501 4.5 9.9 1.0 O A:VAL88 4.6 4.7 1.0 C1' A:ATP501 4.6 4.2 1.0 CD A:GLU283 4.7 6.3 1.0 C4' A:ATP501 4.7 5.2 1.0 CA A:HIS89 4.8 4.4 1.0 CE1 A:HIS89 4.8 7.3 1.0 N A:GLY90 4.9 4.8 1.0 CD A:GLU159 5.0 5.0 1.0

J.Deng, A.Schnaufer, R.Salavati, K.D.Stuart, W.G.Hol. High Resolution Crystal Structure of A Key Editosome Enzyme From Trypanosoma Brucei: Rna Editing Ligase 1. J.Mol.Biol. V. 343 601 2004.
ISSN: ISSN 0022-2836
PubMed: 15465048
DOI: 10.1016/J.JMB.2004.08.041