Magnesium in PDB 1xfi: X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340

The structure of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340, PDB code: 1xfi was solved by G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., E.Bitto, C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.39 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	40.174, 43.280, 52.644, 74.57, 74.60, 84.04
R / Rfree (%)	16.9 / 22.1

The binding sites of Magnesium atom in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340 (pdb code 1xfi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340, PDB code: 1xfi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg400 b:20.0 occ:1.00 O A:HOH469 2.0 20.6 1.0 O A:HOH486 2.1 21.4 1.0 O A:HOH419 2.1 20.9 1.0 OD1 A:ASN221 2.1 16.6 1.0 OD1 A:ASP256 2.1 18.0 1.0 OD1 A:ASP220 2.2 17.3 1.0 CG A:ASP256 3.1 18.9 1.0 CG A:ASN221 3.2 22.2 1.0 CG A:ASP220 3.2 15.7 1.0 OD2 A:ASP256 3.4 18.7 1.0 OD2 A:ASP220 3.6 18.6 1.0 ND2 A:ASN221 3.8 29.5 1.0 O A:HOH487 3.9 31.1 1.0 OD1 A:ASN255 4.2 20.2 1.0 N A:ASN221 4.3 14.9 1.0 CB A:ASN221 4.3 15.5 1.0 CB A:ASP256 4.4 15.3 1.0 CA A:ASN221 4.4 15.0 1.0 C A:ASP220 4.4 16.3 1.0 O A:HOH587 4.5 40.0 1.0 CB A:ASP220 4.5 17.5 1.0 NH1 A:ARG322 4.6 14.0 1.0 CA A:ASP256 4.6 16.4 1.0 N A:ASP256 4.7 16.1 1.0 O A:ASP220 4.7 15.3 1.0 CA A:ASP220 4.8 15.6 1.0 O A:HOH511 4.8 34.2 1.0

Magnesium binding site 2 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT2G17340 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:48.4 occ:1.00 O A:HOH447 1.9 29.0 1.0 O A:HOH416 2.0 24.3 1.0 O A:HOH444 2.2 34.2 1.0 OE1 A:GLU325 3.5 31.2 1.0 OE2 A:GLU325 3.7 24.5 1.0 SG A:CYS104 4.0 19.4 1.0 CD A:GLU325 4.0 18.6 1.0 CG A:PRO294 4.3 19.0 1.0 NE2 A:HIS344 4.3 25.6 1.0 CZ A:PHE49 4.4 19.7 1.0 NH2 A:ARG107 4.5 20.2 1.0 CG1 A:VAL295 4.5 13.2 1.0 CB A:PRO294 4.6 15.5 1.0 O A:HOH569 4.7 37.0 1.0 CE2 A:PHE49 4.8 23.2 1.0 O A:HOH607 4.9 33.0 1.0 O A:HOH676 5.0 40.1 1.0

E.Bitto, C.A.Bingman, S.T.Allard, G.E.Wesenberg, G.N.Phillips. The Structure at 1.7 A Resolution of the Protein Product of the AT2G17340 Gene From Arabidopsis Thaliana. Acta Crystallogr.,Sect.F V. 61 630 2005.
ISSN: ESSN 1744-3091
PubMed: 16511115
DOI: 10.1107/S1744309105017690