Magnesium in PDB 1y37: Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1

All present enzymatic activity of Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1:
3.8.1.3;

The structure of Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1, PDB code: 1y37 was solved by R.Omi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.81 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	85.942, 137.631, 52.920, 90.00, 95.09, 90.00
R / Rfree (%)	18.1 / 20.3

The binding sites of Magnesium atom in the Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1 (pdb code 1y37). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1, PDB code: 1y37:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:8.5 occ:1.00 OD1 A:ASP211 2.7 10.3 1.0 OD2 A:ASP219 2.7 9.9 1.0 O A:TYR77 2.7 10.2 1.0 O A:ASP211 3.1 8.3 1.0 CZ A:PHE79 3.4 8.7 1.0 CE1 A:PHE79 3.4 10.2 1.0 CE2 A:PHE79 3.5 8.9 1.0 CD1 A:PHE79 3.6 8.5 1.0 SD A:MET82 3.7 16.3 1.0 CD2 A:PHE79 3.7 9.8 1.0 N A:PHE79 3.7 9.9 1.0 CG A:PHE79 3.7 9.2 1.0 CG A:ASP211 3.8 8.2 1.0 CG A:ASP219 3.8 12.0 1.0 C A:SER78 3.8 7.9 1.0 CB A:ALA214 3.8 8.1 1.0 C A:ASP211 3.9 7.6 1.0 C A:TYR77 3.9 8.6 1.0 CA A:SER78 3.9 11.4 1.0 CA A:ASP211 3.9 7.4 1.0 N A:GLY215 4.1 9.6 1.0 OD1 A:ASP219 4.3 13.7 1.0 CB A:ASP211 4.4 9.3 1.0 NH2 A:ARG105 4.4 7.9 1.0 CA A:PHE79 4.4 9.7 1.0 O A:SER78 4.4 10.3 1.0 N A:SER78 4.4 10.4 1.0 CA A:GLY215 4.5 9.2 1.0 C A:ALA214 4.5 8.7 1.0 CB A:PHE79 4.6 10.3 1.0 CE A:MET82 4.7 8.9 1.0 CA A:ALA214 4.8 8.9 1.0 OD2 A:ASP211 4.8 8.6 1.0 CB A:ASP219 5.0 11.2 1.0

Magnesium binding site 2 out of 2 in the Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Fluoroacetate Dehalogenase From Burkholderia Sp. FA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:8.8 occ:1.00 OD2 B:ASP219 2.6 10.9 1.0 OD1 B:ASP211 2.7 8.7 1.0 O B:TYR77 2.8 9.8 1.0 O B:ASP211 3.2 8.4 1.0 CZ B:PHE79 3.4 8.2 1.0 CE1 B:PHE79 3.4 8.0 1.0 CE2 B:PHE79 3.5 9.3 1.0 CD1 B:PHE79 3.6 7.8 1.0 SD B:MET82 3.6 17.2 1.0 CD2 B:PHE79 3.7 9.6 1.0 N B:PHE79 3.7 9.9 1.0 CG B:PHE79 3.7 8.7 1.0 CG B:ASP219 3.7 13.1 1.0 C B:SER78 3.8 9.9 1.0 CG B:ASP211 3.8 8.8 1.0 CB B:ALA214 3.9 8.4 1.0 C B:TYR77 3.9 7.9 1.0 C B:ASP211 3.9 7.4 1.0 CA B:SER78 4.0 9.2 1.0 CA B:ASP211 4.0 8.6 1.0 N B:GLY215 4.0 7.9 1.0 OD1 B:ASP219 4.2 16.5 1.0 CA B:PHE79 4.3 8.2 1.0 NH2 B:ARG105 4.4 7.7 1.0 O B:SER78 4.4 10.3 1.0 CA B:GLY215 4.4 8.9 1.0 N B:SER78 4.4 9.3 1.0 CB B:ASP211 4.4 7.8 1.0 C B:ALA214 4.5 7.5 1.0 CB B:PHE79 4.6 9.6 1.0 CE B:MET82 4.7 6.0 1.0 OD2 B:ASP211 4.8 8.9 1.0 CA B:ALA214 4.8 7.7 1.0 CB B:ASP219 5.0 8.7 1.0

R.Omi, K.Jitsumori, T.Kurihara, N.Esaki, M.Goto, I.Miyahara, K.Hirotsu. Crystal Structure of Fluoroacetate Dehalogenase FA1 To Be Published.