Magnesium in PDB 1yey: Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

The structure of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 1yey was solved by A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burley, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.34
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	130.527, 130.527, 193.749, 90.00, 90.00, 120.00
R / Rfree (%)	24.7 / 27.2

The binding sites of Magnesium atom in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 (pdb code 1yey). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 1yey:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg6001 b:61.2 occ:1.00 O A:HOH5232 2.4 25.3 1.0 OE1 A:GLU301 2.4 28.0 1.0 OD2 A:ASP248 2.6 27.5 1.0 OE2 A:GLU274 2.6 20.6 1.0 O A:HOH5231 2.8 32.2 1.0 OE2 A:GLU301 2.8 28.9 1.0 CD A:GLU301 2.9 29.0 1.0 OD1 A:ASN250 3.3 28.2 1.0 CG A:ASP248 3.5 27.2 1.0 NZ A:LYS220 3.7 47.1 1.0 OD1 A:ASP248 3.8 28.5 1.0 CD A:GLU274 3.8 23.8 1.0 OE2 A:GLU275 4.2 34.6 1.0 CG A:ASN250 4.3 28.8 1.0 CG A:GLU301 4.3 28.7 1.0 ND1 A:HIS351 4.5 29.2 1.0 NZ A:LYS218 4.5 34.2 1.0 CE1 A:HIS351 4.5 30.3 1.0 CG A:GLU274 4.6 22.1 1.0 ND2 A:ASN250 4.7 27.1 1.0 OE1 A:GLU274 4.7 23.6 1.0 CB A:ASP248 4.8 27.1 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg6002 b:33.6 occ:1.00 OE1 B:GLU301 2.5 24.4 1.0 O B:HOH5234 2.5 10.2 1.0 OD2 B:ASP248 2.6 19.5 1.0 O B:HOH5233 2.6 15.6 1.0 OE2 B:GLU301 2.7 20.7 1.0 OE2 B:GLU274 2.9 26.9 1.0 CD B:GLU301 2.9 22.7 1.0 NZ B:LYS220 3.0 19.9 1.0 CG B:ASP248 3.6 18.4 1.0 OD1 B:ASN250 3.7 24.9 1.0 OD1 B:ASP248 4.0 19.8 1.0 CD B:GLU274 4.1 25.2 1.0 CE1 B:HIS351 4.3 23.2 1.0 CG B:ASN250 4.3 21.5 1.0 ND1 B:HIS351 4.3 22.9 1.0 ND2 B:ASN250 4.3 19.3 1.0 O B:HOH5037 4.4 32.0 1.0 CG B:GLU301 4.4 21.6 1.0 OE2 B:GLU275 4.5 21.2 1.0 CE B:LYS220 4.5 23.3 1.0 O B:HOH5029 4.5 17.0 1.0 NZ B:LYS218 4.7 18.8 1.0 CB B:ASP248 4.9 19.8 1.0 CG B:GLU274 4.9 23.9 1.0 OE1 B:GLU274 4.9 21.5 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg6003 b:26.2 occ:1.00 OE1 C:GLU301 2.3 26.6 1.0 O C:HOH5235 2.4 10.5 1.0 OE2 C:GLU274 2.5 15.4 1.0 OD2 C:ASP248 2.5 20.5 1.0 O C:HOH5236 2.7 14.4 1.0 OE2 C:GLU301 2.9 26.3 1.0 CD C:GLU301 2.9 26.3 1.0 NZ C:LYS220 3.2 25.4 1.0 CG C:ASP248 3.6 20.7 1.0 CD C:GLU274 3.7 20.0 1.0 OD1 C:ASN250 3.7 26.3 1.0 OD1 C:ASP248 4.1 20.8 1.0 ND1 C:HIS351 4.2 29.1 1.0 CE1 C:HIS351 4.3 29.8 1.0 CG C:GLU301 4.3 26.9 1.0 NZ C:LYS218 4.4 29.1 1.0 OE2 C:GLU275 4.4 28.6 1.0 CG C:ASN250 4.5 24.1 1.0 OE1 C:GLU274 4.5 17.5 1.0 CG C:GLU274 4.6 18.7 1.0 ND2 C:ASN250 4.6 21.9 1.0 CE C:LYS220 4.7 28.1 1.0 O C:HOH5100 4.8 23.9 1.0 CB C:ASP248 4.9 19.5 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg6004 b:43.6 occ:1.00 O D:HOH5237 2.4 18.3 1.0 OE1 D:GLU301 2.4 32.2 1.0 OD2 D:ASP248 2.5 32.1 1.0 OE2 D:GLU274 2.6 25.5 1.0 O D:HOH5238 2.6 22.3 1.0 OE2 D:GLU301 2.9 22.8 1.0 CD D:GLU301 3.0 26.8 1.0 NZ D:LYS220 3.2 40.8 1.0 OD1 D:ASN250 3.5 31.8 1.0 CG D:ASP248 3.6 32.8 1.0 CD D:GLU274 3.8 28.2 1.0 OD1 D:ASP248 4.0 34.8 1.0 ND1 D:HIS351 4.4 26.1 1.0 CE1 D:HIS351 4.4 23.5 1.0 OE2 D:GLU275 4.4 30.6 1.0 CG D:ASN250 4.4 30.6 1.0 CG D:GLU301 4.4 24.6 1.0 NZ D:LYS218 4.5 31.4 1.0 OE1 D:GLU274 4.6 27.8 1.0 CG D:GLU274 4.6 27.8 1.0 O D:HOH5122 4.7 27.8 1.0 CE D:LYS220 4.7 42.1 1.0 ND2 D:ASN250 4.8 32.5 1.0 CB D:ASP248 4.9 30.4 1.0 O D:HOH5088 5.0 28.0 1.0

A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo. Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 To Be Published.