Magnesium in PDB 2jf5: Crystal Structure of LYS63-Linked Di-Ubiquitin

The structure of Crystal Structure of LYS63-Linked Di-Ubiquitin, PDB code: 2jf5 was solved by D.Komander, P.Odenwaelder, D.Barford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.95
Space group	P 43 3 2
Cell size a, b, c (Å), α, β, γ (°)	105.021, 105.021, 105.021, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 25

The structure of Crystal Structure of LYS63-Linked Di-Ubiquitin also contains other interesting chemical elements:

Cadmium	(Cd)	4 atoms
Cobalt	(Co)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of LYS63-Linked Di-Ubiquitin (pdb code 2jf5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of LYS63-Linked Di-Ubiquitin, PDB code: 2jf5:

Magnesium binding site 1 out of 1 in the Crystal Structure of LYS63-Linked Di-Ubiquitin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of LYS63-Linked Di-Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1078 b:29.2 occ:1.00 N A:MET1 1.7 44.4 1.0 O A:HOH2005 1.9 40.9 1.0 OE2 A:GLU16 2.1 47.6 1.0 CA A:MET1 2.8 46.3 1.0 CD A:GLU16 3.0 47.2 1.0 OE1 A:GLU16 3.2 49.6 1.0 C A:MET1 3.4 45.3 1.0 O A:MET1 3.7 45.6 1.0 CB A:MET1 4.1 46.3 1.0 N A:GLN2 4.2 44.1 1.0 CG A:GLU16 4.4 43.1 1.0 O A:VAL17 4.7 39.6 1.0

D.Komander, F.Reyes-Turcu, J.D.F.Licchesi, P.Odenwaelder, K.D.Wilkinson, D.Barford. Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains. Embo Rep. V. 10 466 2009.
ISSN: ISSN 1469-221X
PubMed: 19373254
DOI: 10.1038/EMBOR.2009.55