Atomistry » Magnesium » PDB 2o56-2oh6 » 2ock
Atomistry »
  Magnesium »
    PDB 2o56-2oh6 »
      2ock »

Magnesium in PDB 2ock: Crystal Structure of Valacyclovir Hydrolase D123N Mutant

Protein crystallography data

The structure of Crystal Structure of Valacyclovir Hydrolase D123N Mutant, PDB code: 2ock was solved by L.Lai, Z.Xu, G.L.Amidon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.56 / 1.85
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 88.989, 88.989, 86.353, 90.00, 90.00, 120.00
R / Rfree (%) 23.7 / 27.3

Other elements in 2ock:

The structure of Crystal Structure of Valacyclovir Hydrolase D123N Mutant also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Valacyclovir Hydrolase D123N Mutant (pdb code 2ock). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Valacyclovir Hydrolase D123N Mutant, PDB code: 2ock:

Magnesium binding site 1 out of 1 in 2ock

Go back to Magnesium Binding Sites List in 2ock
Magnesium binding site 1 out of 1 in the Crystal Structure of Valacyclovir Hydrolase D123N Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Valacyclovir Hydrolase D123N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:22.0
occ:0.50
OD2 A:ASP204 2.0 15.0 1.0
O A:HOH410 2.2 27.9 1.0
O A:HOH408 2.7 36.5 1.0
CG A:ASP204 3.1 17.7 1.0
CB A:ASP204 3.7 16.7 1.0
OD1 A:ASP204 4.0 17.6 1.0
NH2 A:ARG209 4.1 18.3 1.0
O A:HOH409 4.2 46.2 1.0
CA A:ASP204 4.3 15.5 1.0
O A:HOH445 4.5 51.6 1.0
O A:HOH459 4.6 26.4 1.0
CZ A:ARG209 4.8 18.1 1.0
N A:ASP204 4.9 15.6 1.0
NE A:ARG209 4.9 16.6 1.0

Reference:

L.Lai, Z.Xu, J.Zhou, K.D.Lee, G.L.Amidon. Molecular Basis of Prodrug Activation By Human Valacyclovirase, An Alpha-Amino Acid Ester Hydrolase. J.Biol.Chem. V. 283 9318 2008.
ISSN: ISSN 0021-9258
PubMed: 18256025
DOI: 10.1074/JBC.M709530200
Page generated: Mon Dec 14 07:32:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy