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Magnesium in PDB 2om6: Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3

Enzymatic activity of Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3

All present enzymatic activity of Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3:
3.1.3.3;

Protein crystallography data

The structure of Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3, PDB code: 2om6 was solved by J.Jeyakanthan, S.Vaijayanthimala, D.Gayathri, D.Velmurugan, S.Baba, A.Ebihara, A.Shinkai, S.Kuramitsu, Y.Shiro, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.052, 66.239, 79.014, 90.00, 107.62, 90.00
R / Rfree (%) 18.6 / 25.9

Other elements in 2om6:

The structure of Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3 (pdb code 2om6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3, PDB code: 2om6:

Magnesium binding site 1 out of 1 in 2om6

Go back to Magnesium Binding Sites List in 2om6
Magnesium binding site 1 out of 1 in the Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1401

b:33.9
occ:1.00
 O1 B:SO41302 2.3 44.7 1.0
O B:HOH1624 2.5 39.2 1.0
OD1 B:ASP10 2.8 27.2 1.0
O B:HOH1579 3.1 23.4 1.0
N B:TRP12 3.5 15.6 1.0
CD1 B:TRP12 3.6 21.0 1.0
O B:HOH1404 3.8 15.3 1.0
S B:SO41302 3.8 52.2 1.0
N B:ASN123 3.9 11.7 1.0
N B:VAL11 3.9 20.9 1.0
CB B:TRP12 3.9 16.4 1.0
CG B:ASP10 3.9 29.7 1.0
O B:ASN123 4.0 29.8 1.0
CA B:GLY122 4.0 15.7 1.0
CG B:TRP12 4.1 23.7 1.0
CA B:TRP12 4.2 17.1 1.0
CB B:VAL11 4.4 15.1 1.0
O3 B:SO41302 4.4 37.1 1.0
CA B:VAL11 4.4 7.4 1.0
C B:GLY122 4.4 20.7 1.0
C B:VAL11 4.4 18.8 1.0
NZ B:LYS158 4.4 12.4 1.0
O2 B:SO41302 4.4 52.4 1.0
OD2 B:ASP10 4.4 38.1 1.0
O4 B:SO41302 4.6 37.5 1.0
O B:TRP12 4.7 24.7 1.0
C B:ASN123 4.7 22.0 1.0
O B:HOH1595 4.7 45.4 1.0
NE1 B:TRP12 4.8 25.5 1.0
O B:HOH1492 4.8 29.5 1.0
CA B:ASN123 4.8 24.1 1.0
C B:ASP10 4.9 17.6 1.0
C B:TRP12 5.0 20.3 1.0

Reference:

J.Jeyakanthan, S.Vaijayanthimala, D.Gayathri, D.Velmurugan, S.Baba, A.Ebihara, A.Shinkai, S.Kuramitsu, Y.Shiro, S.Yokoyama. Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) From Pyrococcus Horikoshii OT3 To Be Published.
Page generated: Sun Aug 10 12:29:37 2025

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