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Magnesium in PDB 2p4p: Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi

Protein crystallography data

The structure of Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi, PDB code: 2p4p was solved by M.E.Cuff, L.Volkart, S.Moy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.74 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.552, 58.667, 87.434, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 26.2

Other elements in 2p4p:

The structure of Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi (pdb code 2p4p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi, PDB code: 2p4p:

Magnesium binding site 1 out of 1 in 2p4p

Go back to Magnesium Binding Sites List in 2p4p
Magnesium binding site 1 out of 1 in the Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A CORC_HLYC Domain From Haemophilus Ducreyi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:41.1
occ:1.00
OE1 B:GLU68 2.1 38.5 1.0
OD1 B:ASP66 2.2 29.1 1.0
O B:THR67 2.4 25.6 1.0
O A:HOH252 2.8 61.8 1.0
CG B:ASP66 3.1 26.9 1.0
O B:HOH448 3.1 25.6 1.0
OD2 B:ASP66 3.2 29.3 1.0
CD B:GLU68 3.2 35.7 1.0
C B:THR67 3.6 26.2 1.0
OE2 B:GLU68 3.8 38.0 1.0
O B:HOH444 3.9 34.5 1.0
N B:THR67 4.2 24.9 1.0
OD1 A:ASP66 4.3 34.2 1.0
CG B:GLU68 4.4 32.1 1.0
CA B:GLU68 4.5 27.6 1.0
N B:GLU68 4.5 26.2 1.0
CB B:ASP66 4.5 23.9 1.0
CB B:GLU68 4.5 28.1 1.0
CA B:THR67 4.5 26.1 1.0
OG1 B:THR67 4.6 28.2 1.0
O A:THR67 4.9 28.2 1.0
C B:ASP66 4.9 25.0 1.0
CA B:ASP66 4.9 25.0 1.0

Reference:

M.E.Cuff, L.Volkart, S.Moy, A.Joachimiak. The Structure of A CORC_HLYC Domain From Haemophilus Ducreyi To Be Published.
Page generated: Mon Dec 14 07:34:08 2020

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