Magnesium in PDB 2zl7: Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus

The structure of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus, PDB code: 2zl7 was solved by J.M.Choi, A.M.Huston, M.K.Estes, B.V.V.Prasad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.07 / 1.35
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.069, 83.069, 164.316, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 18.8

The structure of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus (pdb code 2zl7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus, PDB code: 2zl7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg519 b:19.0 occ:1.00 OH A:TYR441 2.7 12.1 1.0 O A:LEU236 2.7 10.5 1.0 O A:PRO234 2.9 11.2 1.0 N A:PHE500 3.2 11.2 1.0 CZ A:TYR441 3.6 11.0 1.0 CG1 A:VAL499 3.6 13.0 1.0 CA A:VAL499 3.7 11.8 1.0 CE1 A:TYR441 3.7 10.1 1.0 C A:LEU236 3.9 10.4 1.0 C A:VAL499 3.9 12.1 1.0 O A:PHE500 4.0 12.3 1.0 N A:LEU236 4.0 10.7 1.0 C A:PRO234 4.0 10.3 1.0 CB A:VAL499 4.1 12.3 1.0 CA A:PHE500 4.2 11.6 1.0 CB A:PHE500 4.3 11.3 1.0 CD2 A:LEU238 4.3 14.3 1.0 C A:PHE500 4.5 12.2 1.0 CA A:LEU236 4.5 10.0 1.0 CG2 A:VAL499 4.6 12.9 1.0 O A:GLY498 4.7 11.5 1.0 CB A:PRO234 4.7 11.4 1.0 CE2 A:TYR441 4.8 11.5 1.0 CA A:PRO234 4.9 11.0 1.0 CD1 A:LEU241 4.9 11.3 1.0 CD2 A:PHE500 4.9 11.5 1.0 N A:VAL499 4.9 11.8 1.0 N A:PRO237 4.9 10.5 1.0 N A:ASN235 5.0 10.1 1.0

Magnesium binding site 2 out of 2 in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg520 b:19.9 occ:1.00 OH B:TYR441 2.6 12.3 1.0 O B:LEU236 2.8 10.9 1.0 O B:PRO234 2.8 10.5 1.0 N B:PHE501 3.2 11.8 1.0 CZ B:TYR441 3.5 11.7 1.0 CG1 B:VAL500 3.6 13.1 1.0 CE1 B:TYR441 3.7 10.8 1.0 CA B:VAL500 3.7 11.5 1.0 O B:PHE501 3.9 12.5 1.0 C B:LEU236 3.9 10.3 1.0 C B:VAL500 3.9 12.2 1.0 C B:PRO234 4.0 10.3 1.0 N B:LEU236 4.0 10.1 1.0 CA B:PHE501 4.1 11.8 1.0 CB B:VAL500 4.2 12.3 1.0 CB B:PHE501 4.2 11.7 1.0 C B:PHE501 4.5 12.9 1.0 CA B:LEU236 4.5 9.9 1.0 CD2 B:LEU238 4.6 13.0 1.0 CB B:PRO234 4.7 11.6 1.0 CG2 B:VAL500 4.7 12.6 1.0 CE2 B:TYR441 4.7 11.6 1.0 O B:GLY499 4.7 11.0 1.0 CD2 B:PHE501 4.8 12.6 1.0 CA B:PRO234 4.8 10.5 1.0 CD1 B:LEU241 4.8 10.2 1.0 N B:ASN235 4.9 10.5 1.0 N B:PRO234 4.9 11.1 1.0 N B:VAL500 5.0 11.7 1.0 CG B:PHE501 5.0 11.2 1.0 CA B:ASN235 5.0 11.0 1.0 N B:PRO237 5.0 10.3 1.0 CB B:LEU236 5.0 9.7 1.0 CD1 B:TYR441 5.0 11.0 1.0

J.M.Choi, A.M.Hutson, M.K.Estes, B.V.V.Prasad. Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus Proc.Natl.Acad.Sci.Usa V. 105 9175 2008.
ISSN: ISSN 0027-8424
PubMed: 18599458
DOI: 10.1073/PNAS.0803275105