Magnesium in PDB 370d: Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg)

The structure of Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg), PDB code: 370d was solved by L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.67
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	23.140, 40.120, 41.900, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 23.9

The binding sites of Magnesium atom in the Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg) (pdb code 370d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg), PDB code: 370d:

Magnesium binding site 1 out of 1 in the Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg20 b:29.7 occ:1.00 O A:HOH22 2.1 18.4 1.0 O A:HOH21 2.2 20.5 1.0 O A:HOH25 2.2 47.2 1.0 O A:HOH26 2.3 34.9 1.0 O A:HOH23 2.3 19.4 1.0 O A:HOH24 2.3 33.3 1.0 O A:HOH70 3.9 38.7 1.0 O A:HOH56 4.0 29.3 1.0 O6 A:DG7 4.1 14.3 1.0 O B:HOH28 4.1 31.2 1.0 N7 A:DG6 4.3 13.6 1.0 N7 A:DG7 4.3 15.5 1.0 O A:HOH29 4.4 25.7 1.0 O A:HOH78 4.4 48.6 1.0 O6 A:DG6 4.4 11.1 1.0 O A:HOH27 4.5 21.6 1.0 O A:HOH59 4.5 53.6 1.0 C6 A:DG7 4.9 13.3 1.0 C5 A:DG6 5.0 11.4 1.0 C6 A:DG6 5.0 10.5 1.0 C5 A:DG7 5.0 15.1 1.0

L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina. Structural Variability of A-Dna in Crystals of the Octamer D(Pcpcpcpgpcpgpgpg) J.Biomol.Struct.Dyn. V. 15 151 1997.
ISSN: ISSN 0739-1102
PubMed: 9283988