Magnesium in PDB 3bfv: Crystal Structure of the Chimerical Protein Capab

The structure of Crystal Structure of the Chimerical Protein Capab, PDB code: 3bfv was solved by V.Olivares-Illana, P.Meyer, S.Morera, S.Nessler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	36.460, 52.520, 68.110, 107.71, 89.95, 110.32
R / Rfree (%)	17.8 / 21.7

The binding sites of Magnesium atom in the Crystal Structure of the Chimerical Protein Capab (pdb code 3bfv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Chimerical Protein Capab, PDB code: 3bfv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Chimerical Protein Capab


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Chimerical Protein Capab within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg296 b:8.1 occ:1.00 O A:HOH1381 2.1 4.8 1.0 O3B A:ADP301 2.1 4.1 1.0 O A:HOH1351 2.2 4.6 1.0 O A:HOH1418 2.2 2.6 1.0 OG A:SER1056 2.2 2.8 1.0 O A:HOH1347 2.2 4.7 1.0 CB A:SER1056 3.3 2.8 1.0 PB A:ADP301 3.4 4.8 1.0 O1B A:ADP301 3.6 3.5 1.0 N A:SER1056 3.9 3.1 1.0 O A:HOH1343 4.0 5.0 1.0 OG1 A:THR1084 4.1 4.9 1.0 OD2 A:ASP1157 4.1 3.0 1.0 O1A A:ADP301 4.1 4.4 1.0 O A:HOH1378 4.1 6.3 1.0 O A:HOH1338 4.1 3.0 1.0 CA A:SER1056 4.1 3.3 1.0 OD2 A:ASP1079 4.2 5.1 1.0 OD1 A:ASP1157 4.4 4.0 1.0 O3A A:ADP301 4.4 3.2 1.0 O2B A:ADP301 4.4 4.2 1.0 CE A:LYS1055 4.5 3.0 1.0 O A:LYS1082 4.5 4.6 1.0 O A:THR1158 4.6 4.4 1.0 PA A:ADP301 4.6 4.9 1.0 CB A:LYS1055 4.6 3.5 1.0 CG A:ASP1157 4.6 2.6 1.0 O2A A:ADP301 4.9 4.7 1.0 C A:LYS1055 5.0 3.4 1.0 CG2 A:THR1084 5.0 4.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Chimerical Protein Capab


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Chimerical Protein Capab within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg276 b:9.9 occ:1.00 O B:HOH1399 2.1 5.8 1.0 O3B B:ADP301 2.1 5.1 1.0 O B:HOH1335 2.2 3.0 1.0 OG B:SER1056 2.2 4.0 1.0 O B:HOH1347 2.2 2.9 1.0 O B:HOH1334 2.2 3.1 1.0 CB B:SER1056 3.3 3.9 1.0 PB B:ADP301 3.4 4.4 1.0 O1B B:ADP301 3.7 3.9 1.0 N B:SER1056 4.0 4.0 1.0 O B:HOH1360 4.0 6.0 1.0 OG1 B:THR1084 4.0 4.2 1.0 O B:HOH1321 4.1 2.9 1.0 OD2 B:ASP1157 4.1 2.3 1.0 O1A B:ADP301 4.1 3.7 1.0 OD2 B:ASP1079 4.2 6.2 1.0 O B:HOH1333 4.2 5.1 1.0 CA B:SER1056 4.2 4.0 1.0 OD1 B:ASP1157 4.4 2.9 1.0 O3A B:ADP301 4.4 4.5 1.0 O2B B:ADP301 4.4 3.3 1.0 CE B:LYS1055 4.4 3.0 1.0 O B:LYS1082 4.5 4.0 1.0 O B:THR1158 4.6 3.5 1.0 CG B:ASP1157 4.6 2.0 1.0 CB B:LYS1055 4.7 3.7 1.0 PA B:ADP301 4.7 5.5 1.0 O2A B:ADP301 5.0 5.6 1.0 CG2 B:THR1084 5.0 3.4 1.0

V.Olivares-Illana, P.Meyer, E.Bechet, V.Gueguen-Chaignon, D.Soulat, S.Lazereg-Riquier, I.Mijakovic, J.Deutscher, A.J.Cozzone, O.Laprevote, S.Morera, C.Grangeasse, S.Nessler. Structural Basis For the Regulation Mechanism of the Tyrosine Kinase Capb From Staphylococcus Aureus. Plos Biol. V. 6 E143 2008.
ISSN: ISSN 1544-9173
PubMed: 18547145
DOI: 10.1371/JOURNAL.PBIO.0060143