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Magnesium in PDB 5y41: Crystal Structure of Ligand-Bound NURR1-Lbd

Protein crystallography data

The structure of Crystal Structure of Ligand-Bound NURR1-Lbd, PDB code: 5y41 was solved by R.Sreekanth, J.Lescar, H.S.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.05
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.520, 131.460, 47.130, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 25.3

Other elements in 5y41:

The structure of Crystal Structure of Ligand-Bound NURR1-Lbd also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ligand-Bound NURR1-Lbd (pdb code 5y41). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ligand-Bound NURR1-Lbd, PDB code: 5y41:

Magnesium binding site 1 out of 1 in 5y41

Go back to Magnesium Binding Sites List in 5y41
Magnesium binding site 1 out of 1 in the Crystal Structure of Ligand-Bound NURR1-Lbd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ligand-Bound NURR1-Lbd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg605

b:51.3
occ:1.00
O A:PHE598 2.2 43.9 1.0
O A:HOH736 2.2 57.2 1.0
O A:HOH784 2.8 51.2 1.0
C A:PHE598 3.2 43.7 1.0
OXT A:PHE598 3.3 42.7 1.0
CA A:PHE598 4.6 44.5 1.0

Reference:

S.Rajan, Y.Jang, C.H.Kim, H.T.Toh, J.Jeon, B.Song, A.S.Maqueda, J.Lescar, J.Shin, X.Liu, M.Feitosa, D.Hwang, K.L.Lim, H.M.Park, C.H.Lee, G.A.Petsko, H.S.Yoon, K.S.Kim. Co-Crystal Structure and Function of NURR1 Bound to the Cyclopentenone Prostaglandin A1 To Be Published.
Page generated: Mon Sep 30 10:45:49 2024

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