Magnesium in PDB 3bos: Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution

The structure of Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution, PDB code: 3bos was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.55 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.037, 64.032, 153.640, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 20.1

The structure of Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Sodium	(Na)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution (pdb code 3bos). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution, PDB code: 3bos:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:14.2 occ:1.00 O3B A:CDP300 2.1 14.3 1.0 OG1 A:THR65 2.1 13.7 1.0 O A:HOH311 2.1 12.1 1.0 O A:HOH313 2.1 13.4 1.0 O A:HOH315 2.2 14.6 1.0 O A:HOH310 2.2 10.9 1.0 CB A:THR65 3.1 15.9 1.0 PB A:CDP300 3.3 14.7 1.0 O1B A:CDP300 3.5 18.5 1.0 N A:THR65 3.9 15.4 1.0 CA A:THR65 4.1 13.3 1.0 O A:HOH338 4.1 22.3 1.0 OD2 A:ASP110 4.1 16.4 1.0 O2A A:CDP300 4.2 18.6 1.0 OD1 A:ASP110 4.2 15.0 1.0 O3A A:CDP300 4.2 17.6 1.0 CG2 A:THR65 4.2 15.3 1.0 OD2 A:ASP111 4.3 17.0 1.0 O2B A:CDP300 4.4 15.1 1.0 O A:HOH330 4.4 19.6 1.0 OD1 A:ASP111 4.5 18.1 1.0 CG A:ASP110 4.5 16.2 1.0 O A:HOH531 4.6 49.6 1.0 PA A:CDP300 4.6 17.0 1.0 O A:HOH366 4.6 26.9 1.0 NH2 A:ARG64 4.6 20.8 1.0 O B:HOH356 4.7 21.7 1.0 O1A A:CDP300 4.8 17.2 1.0 CG A:ASP111 4.8 17.1 1.0 CB A:ARG64 4.9 14.8 1.0 C A:ARG64 5.0 16.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Dna Replication Regulator Hda (SAMA_1916) From Shewanella Amazonensis SB2B at 1.75 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:12.6 occ:1.00 O1B B:CDP300 2.1 10.9 1.0 O B:HOH312 2.1 11.9 1.0 O B:HOH313 2.1 11.9 1.0 OG1 B:THR65 2.1 14.2 1.0 O B:HOH320 2.1 14.6 1.0 O B:HOH311 2.2 10.8 1.0 CB B:THR65 3.2 14.0 1.0 PB B:CDP300 3.3 12.3 1.0 O3B B:CDP300 3.5 16.0 1.0 N B:THR65 3.9 13.1 1.0 CA B:THR65 4.1 13.7 1.0 OD2 B:ASP110 4.1 15.7 1.0 OD1 B:ASP110 4.2 17.3 1.0 OD2 B:ASP111 4.3 16.1 1.0 O2A B:CDP300 4.3 15.5 1.0 CG2 B:THR65 4.3 16.8 1.0 O3A B:CDP300 4.3 12.9 1.0 O2B B:CDP300 4.3 12.0 1.0 O B:HOH377 4.4 25.5 1.0 O B:HOH341 4.4 20.1 1.0 OD1 B:ASP111 4.4 15.8 1.0 O2 B:EDO308 4.5 33.9 1.0 CG B:ASP110 4.5 12.7 1.0 O A:HOH368 4.5 27.5 1.0 NH2 B:ARG64 4.5 20.6 1.0 O B:HOH520 4.6 42.8 1.0 PA B:CDP300 4.6 13.3 1.0 CG B:ASP111 4.8 17.0 1.0 O1A B:CDP300 4.8 13.0 1.0 CB B:ARG64 5.0 14.2 1.0 C B:ARG64 5.0 14.2 1.0

Q.Xu, D.Mcmullan, P.Abdubek, T.Astakhova, D.Carlton, C.Chen, H.J.Chiu, T.Clayton, D.Das, M.C.Deller, L.Duan, M.A.Elsliger, J.Feuerhelm, J.Hale, G.W.Han, L.Jaroszewski, K.K.Jin, H.A.Johnson, H.E.Klock, M.W.Knuth, P.Kozbial, S.Sri Krishna, A.Kumar, D.Marciano, M.D.Miller, A.T.Morse, E.Nigoghossian, A.Nopakun, L.Okach, S.Oommachen, J.Paulsen, C.Puckett, R.Reyes, C.L.Rife, N.Sefcovic, C.Trame, H.Van Den Bedem, D.Weekes, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. A Structural Basis For the Regulatory Inactivation of Dnaa. J.Mol.Biol. V. 385 368 2009.
ISSN: ISSN 0022-2836
PubMed: 19000695
DOI: 10.1016/J.JMB.2008.10.059